Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACETWW_RS05425 Genome accession   NZ_CP169072
Coordinates   1056512..1057090 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain T971     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1051512..1062090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETWW_RS05400 (ACETWW_05390) - 1052012..1052527 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  ACETWW_RS05405 (ACETWW_05395) - 1052771..1053523 (-) 753 Protein_999 protoglobin domain-containing protein -
  ACETWW_RS05410 (ACETWW_05400) - 1053427..1054950 (-) 1524 WP_069007026.1 FAD-dependent oxidoreductase -
  ACETWW_RS05415 (ACETWW_05405) - 1055075..1055932 (+) 858 WP_015239527.1 SDR family oxidoreductase -
  ACETWW_RS05420 (ACETWW_05410) - 1055963..1056196 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  ACETWW_RS05425 (ACETWW_05415) comK 1056512..1057090 (+) 579 WP_003155179.1 competence protein ComK Regulator
  ACETWW_RS05430 (ACETWW_05420) - 1057236..1057604 (+) 369 WP_012117235.1 iron chaperone -
  ACETWW_RS05435 (ACETWW_05425) - 1057691..1058005 (+) 315 WP_340230418.1 iron chaperone -
  ACETWW_RS05440 (ACETWW_05430) - 1058128..1058637 (+) 510 Protein_1006 MepB family protein -
  ACETWW_RS05445 (ACETWW_05435) - 1058866..1059576 (-) 711 WP_100001352.1 YrpD family protein -
  ACETWW_RS05450 (ACETWW_05440) - 1059771..1060040 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  ACETWW_RS05455 (ACETWW_05445) - 1060072..1060389 (-) 318 WP_003155166.1 YbjQ family protein -
  ACETWW_RS05460 (ACETWW_05450) - 1060431..1061900 (-) 1470 WP_015239531.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=1049716 ACETWW_RS05425 WP_003155179.1 1056512..1057090(+) (comK) [Bacillus velezensis strain T971]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1049716 ACETWW_RS05425 WP_003155179.1 1056512..1057090(+) (comK) [Bacillus velezensis strain T971]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTATTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment