Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACETQL_RS11870 Genome accession   NZ_CP169064
Coordinates   2486890..2487486 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain FMT2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2476675..2505471 2486890..2487486 within 0


Gene organization within MGE regions


Location: 2476675..2505471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETQL_RS11830 (ACETQL_11830) dnaN 2476675..2477814 (+) 1140 WP_003568447.1 DNA polymerase III subunit beta -
  ACETQL_RS11835 (ACETQL_11835) yaaA 2478667..2478879 (+) 213 WP_003568449.1 S4 domain-containing protein YaaA -
  ACETQL_RS11840 (ACETQL_11840) recF 2478876..2479991 (+) 1116 WP_003572804.1 DNA replication/repair protein RecF -
  ACETQL_RS11845 (ACETQL_11845) gyrB 2480244..2482205 (+) 1962 WP_003568453.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACETQL_RS11850 (ACETQL_11850) gyrA 2482267..2484888 (+) 2622 WP_003581640.1 DNA gyrase subunit A -
  ACETQL_RS11855 (ACETQL_11855) deoC 2484993..2485697 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  ACETQL_RS11860 (ACETQL_11860) ssb 2486004..2486435 (+) 432 WP_373443447.1 single-stranded DNA-binding protein -
  ACETQL_RS11865 (ACETQL_11865) rpsF 2486563..2486859 (+) 297 WP_373443448.1 30S ribosomal protein S6 -
  ACETQL_RS11870 (ACETQL_11870) ssb 2486890..2487486 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  ACETQL_RS11875 (ACETQL_11875) rpsR 2487573..2487809 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  ACETQL_RS11880 (ACETQL_11880) - 2487938..2489182 (-) 1245 WP_264484785.1 ISL3 family transposase -
  ACETQL_RS11885 (ACETQL_11885) - 2489592..2490512 (-) 921 WP_003574021.1 IS30 family transposase -
  ACETQL_RS11890 (ACETQL_11890) - 2490776..2492254 (+) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  ACETQL_RS11895 (ACETQL_11895) cydB 2492247..2493266 (+) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  ACETQL_RS11900 (ACETQL_11900) - 2493293..2493487 (+) 195 WP_016369325.1 hypothetical protein -
  ACETQL_RS11905 (ACETQL_11905) - 2493560..2494153 (-) 594 WP_016369326.1 TMEM175 family protein -
  ACETQL_RS11910 (ACETQL_11910) - 2494550..2494834 (-) 285 Protein_2308 hypothetical protein -
  ACETQL_RS11915 (ACETQL_11915) - 2494856..2495776 (-) 921 WP_003574021.1 IS30 family transposase -
  ACETQL_RS11920 (ACETQL_11920) - 2496202..2497122 (-) 921 WP_003574021.1 IS30 family transposase -
  ACETQL_RS11925 (ACETQL_11925) - 2497268..2497570 (-) 303 WP_016369327.1 hypothetical protein -
  ACETQL_RS11930 (ACETQL_11930) - 2497991..2498911 (+) 921 WP_003574021.1 IS30 family transposase -
  ACETQL_RS11935 (ACETQL_11935) - 2498901..2499761 (-) 861 WP_373443449.1 lysostaphin resistance A-like protein -
  ACETQL_RS11940 (ACETQL_11940) - 2499841..2500023 (-) 183 WP_003568482.1 hypothetical protein -
  ACETQL_RS11945 (ACETQL_11945) - 2500074..2500253 (-) 180 WP_003659010.1 hypothetical protein -
  ACETQL_RS11950 (ACETQL_11950) - 2500745..2501980 (-) 1236 WP_003577228.1 cell wall hydrolase P40 -
  ACETQL_RS11955 (ACETQL_11955) - 2502184..2504757 (-) 2574 WP_016372913.1 ABC transporter permease -
  ACETQL_RS11960 (ACETQL_11960) - 2504770..2505471 (-) 702 WP_003568488.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=1049685 ACETQL_RS11870 WP_003568462.1 2486890..2487486(+) (ssb) [Lacticaseibacillus paracasei strain FMT2]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1049685 ACETQL_RS11870 WP_003568462.1 2486890..2487486(+) (ssb) [Lacticaseibacillus paracasei strain FMT2]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment