Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU64_RS07285 Genome accession   NZ_OZ040035
Coordinates   1519168..1519644 (-) Length   158 a.a.
NCBI ID   WP_001610807.1    Uniprot ID   -
Organism   Escherichia coli isolate 30821_1#280     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1514168..1524644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU64_RS07260 dsdA 1514364..1515692 (-) 1329 WP_000426446.1 D-serine ammonia-lyase -
  ABGU64_RS07265 dsdX 1515710..1517047 (-) 1338 WP_000556035.1 D-serine transporter DsdX -
  ABGU64_RS07270 dsdC 1517265..1518200 (+) 936 WP_001296270.1 DNA-binding transcriptional regulator DsdC -
  ABGU64_RS07275 - 1518400..1518822 (-) 423 Protein_1419 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU64_RS07280 - 1518884..1519105 (-) 222 WP_000691817.1 DUF987 domain-containing protein -
  ABGU64_RS07285 radC 1519168..1519644 (-) 477 WP_001610807.1 RadC family protein Machinery gene
  ABGU64_RS07290 - 1519659..1520144 (-) 486 WP_001610806.1 antirestriction protein -
  ABGU64_RS07295 - 1520236..1521054 (-) 819 WP_001610805.1 DUF932 domain-containing protein -
  ABGU64_RS07300 - 1521382..1524228 (-) 2847 WP_063131951.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17645.27 Da        Isoelectric Point: 7.2020

>NTDB_id=1049679 ABGU64_RS07285 WP_001610807.1 1519168..1519644(-) (radC) [Escherichia coli isolate 30821_1#280]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLADIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1049679 ABGU64_RS07285 WP_001610807.1 1519168..1519644(-) (radC) [Escherichia coli isolate 30821_1#280]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
CGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392