Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8621_RS03305 Genome accession   NZ_AP028370
Coordinates   646106..646543 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain BCH-10767     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 641106..651543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8621_RS03285 (B10767_06500) kdpD 641597..643525 (+) 1929 WP_087700275.1 sensor histidine kinase -
  R8621_RS03290 (B10767_06510) uvrB 643520..645493 (-) 1974 WP_087700273.1 excinuclease ABC subunit UvrB -
  R8621_RS03295 (B10767_06520) - 645647..645877 (+) 231 WP_002852327.1 hypothetical protein -
  R8621_RS03300 (B10767_06530) - 645867..646109 (+) 243 WP_002854947.1 hypothetical protein -
  R8621_RS03305 (B10767_06540) Cj0683 646106..646543 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8621_RS03310 (B10767_06550) priA 646525..648378 (+) 1854 WP_087700271.1 primosomal protein N' -
  R8621_RS03315 (B10767_06560) ispG 648444..649517 (+) 1074 WP_087700269.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  R8621_RS03320 (B10767_06570) flgH 649547..650245 (-) 699 WP_002864738.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=104966 R8621_RS03305 WP_002852324.1 646106..646543(+) (Cj0683) [Campylobacter jejuni strain BCH-10767]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=104966 R8621_RS03305 WP_002852324.1 646106..646543(+) (Cj0683) [Campylobacter jejuni strain BCH-10767]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment