Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ACEUKD_RS21230 Genome accession   NZ_CP169051
Coordinates   1289879..1290976 (+) Length   365 a.a.
NCBI ID   WP_074190484.1    Uniprot ID   A0AAE4S4N7
Organism   Vibrio diabolicus strain SF42     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284879..1295976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS21205 (ACEUKD_21205) - 1286207..1287544 (-) 1338 WP_145472762.1 MATE family efflux transporter -
  ACEUKD_RS21210 (ACEUKD_21210) - 1287666..1287980 (-) 315 WP_005373603.1 DUF496 family protein -
  ACEUKD_RS21215 (ACEUKD_21215) - 1288222..1288425 (+) 204 WP_031780656.1 hypothetical protein -
  ACEUKD_RS21220 (ACEUKD_21220) - 1288591..1289241 (+) 651 WP_258508567.1 YceH family protein -
  ACEUKD_RS21225 (ACEUKD_21225) - 1289238..1289558 (+) 321 WP_012842363.1 GIY-YIG nuclease family protein -
  ACEUKD_RS21230 (ACEUKD_21230) luxP 1289879..1290976 (+) 1098 WP_074190484.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACEUKD_RS21235 (ACEUKD_21235) luxQ 1290976..1293552 (+) 2577 WP_005397731.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  ACEUKD_RS21240 (ACEUKD_21240) - 1293855..1294310 (+) 456 WP_005397727.1 MarR family transcriptional regulator -
  ACEUKD_RS21245 (ACEUKD_21245) - 1294346..1295404 (+) 1059 WP_104972361.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41584.91 Da        Isoelectric Point: 4.9790

>NTDB_id=1049574 ACEUKD_RS21230 WP_074190484.1 1289879..1290976(+) (luxP) [Vibrio diabolicus strain SF42]
MKKALVFSLMSMATVAPIAQATQVLNGYWAYQEFLDQFPEQKQLTNALADAVRETPVPVERDKKRPLKISVVYPGQQISD
YWIRNIDAFEQRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEDHQPFLYVGFDHAEGSRELAVEFGKRFPKQSHYSVLYFSEGYISDIRGNTFINQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1049574 ACEUKD_RS21230 WP_074190484.1 1289879..1290976(+) (luxP) [Vibrio diabolicus strain SF42]
ATGAAAAAAGCGTTAGTATTCTCCCTGATGTCAATGGCCACTGTCGCGCCGATAGCGCAAGCCACTCAAGTCCTCAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCAGAACAGAAGCAGTTAACGAATGCGTTGGCTGACGCCGTGCGAG
AGACTCCTGTTCCGGTTGAAAGAGACAAAAAACGTCCGTTAAAAATTTCTGTGGTTTATCCAGGCCAACAGATTTCGGAT
TATTGGATTCGAAATATCGACGCATTTGAACAGCGTTTAGATAAACTCGATATCGACTATCAACTTAATCAAGTATTTAC
CCGTCCCAACGCAGATATTAAGCAACAAAGTTTGTCTTTAATGGAAGCGCTGAAGAGCAACTCCGATTATCTTATTTTCA
CTCTCGATACCACTAGGCATCGTAAGTTTGTTGAACACGTCTTAGACTCAAAGAAAACCAAGTTGATCTTACAAAATATC
ACTACACCGGTAAGAGATTGGGAGGATCACCAACCGTTCCTTTATGTTGGTTTTGATCATGCTGAAGGCAGCCGTGAGCT
TGCAGTGGAGTTTGGTAAGCGTTTTCCAAAACAGAGCCATTATAGTGTGCTCTACTTTTCAGAAGGGTATATCAGCGATA
TCAGAGGCAATACCTTTATCAATCAAGTCAACCGTGATAACAACTTTGAACTACAATCTGCTTACTATACTAAAGCGACA
AAGCAGTCTGGGTACGAAGCAGCAAAAGCGAGTTTGGAAAAATACCCTGACGTCGATTTTATTTATGCGTGTTCTACAGA
TGTGGCGCTAGGTGCTGTTGATGCGCTGAAAGAATTAGGGCGTGATGATGTCATGATCAACGGCTGGGGTGGCGGCTCTG
CAGAATTAGAAGCGCTTTCGAAAGGGGAGTTAGACGTTACTGTTATGCGTATGAACGATGATACTGGCATTGCAATGGCA
GAAGCGATTAAGTGGGATCTTGAAGGGAAACCCGTTCCAACCGTTTATTCTGGTGATTTTGAAGTCGTCACGAAATCTGA
TTCTCCAGAAAGAATTGAAGCATTAAGAAAACGCGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment