Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8620_RS07570 Genome accession   NZ_AP028369
Coordinates   1467277..1467588 (-) Length   103 a.a.
NCBI ID   WP_052804724.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10666     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1462277..1472588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8620_RS07550 (B10666_15070) ctsE 1463146..1464705 (-) 1560 WP_052804726.1 GspE/PulE family protein Machinery gene
  R8620_RS07555 (B10666_15080) - 1464695..1465282 (-) 588 Protein_1470 transformation system protein -
  R8620_RS07560 (B10666_15090) ctsP 1465286..1465894 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8620_RS07565 (B10666_15100) ctsD 1465887..1467299 (-) 1413 WP_052804725.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8620_RS07570 (B10666_15110) ctsR 1467277..1467588 (-) 312 WP_052804724.1 hypothetical protein Machinery gene
  R8620_RS07575 (B10666_15120) nifJ 1467612..1471172 (-) 3561 WP_052804723.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8620_RS07580 (B10666_15130) - 1471265..1471906 (-) 642 WP_052804722.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12461.40 Da        Isoelectric Point: 6.4656

>NTDB_id=104957 R8620_RS07570 WP_052804724.1 1467277..1467588(-) (ctsR) [Campylobacter jejuni strain BCH-10666]
MCFSTLFAQDNFEEYFKLIDKENRINFNILQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104957 R8620_RS07570 WP_052804724.1 1467277..1467588(-) (ctsR) [Campylobacter jejuni strain BCH-10666]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATTGATAAAGAAAATCGCATAAATTT
TAATATTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACCAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment