Detailed information NTG1049556

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACEUKD_RS12450
• Genome accession: NZ_CP169050
• Coordinates: 2681331..2682317 (-)
• Length: 328 a.a.
• NCBI ID: WP_005393877.1
• Uniprot ID: A0AAE4M7L2
• Organism: Vibrio diabolicus strain SF42
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2676331..2687317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEUKD_RS12435 (ACEUKD_12435)	recA	2676876..2677919 (-)	1044	WP_005393872.1	recombinase RecA	Machinery gene
ACEUKD_RS12440 (ACEUKD_12440)	pncC	2678120..2678602 (-)	483	WP_374093190.1	nicotinamide-nucleotide amidase	-
ACEUKD_RS12445 (ACEUKD_12445)	mutS	2678687..2681248 (+)	2562	WP_374093189.1	DNA mismatch repair protein MutS	-
ACEUKD_RS12450 (ACEUKD_12450)	rpoS	2681331..2682317 (-)	987	WP_005393877.1	RNA polymerase sigma factor RpoS	Regulator
ACEUKD_RS12455 (ACEUKD_12455)	-	2682398..2683321 (-)	924	WP_374093188.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACEUKD_RS12460 (ACEUKD_12460)	-	2683335..2683961 (-)	627	WP_046875091.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACEUKD_RS12465 (ACEUKD_12465)	surE	2683961..2684737 (-)	777	WP_005393882.1	5'/3'-nucleotidase SurE	-
ACEUKD_RS12470 (ACEUKD_12470)	truD	2684737..2685780 (-)	1044	WP_085342635.1	tRNA pseudouridine(13) synthase TruD	-
ACEUKD_RS12475 (ACEUKD_12475)	ispF	2685827..2686303 (-)	477	WP_012841409.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACEUKD_RS12480 (ACEUKD_12480)	ispD	2686318..2687025 (-)	708	WP_182020031.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACEUKD_RS12485 (ACEUKD_12485)	ftsB	2687027..2687308 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37384.30 Da
• Isoelectric Point: 4.7299

>NTDB_id=1049556 ACEUKD_RS12450 WP_005393877.1 2681331..2682317(-) (rpoS) [Vibrio diabolicus strain SF42]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1049556 ACEUKD_RS12450 WP_005393877.1 2681331..2682317(-) (rpoS) [Vibrio diabolicus strain SF42]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCCCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATACAGTAATCG
AGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGCCTTAACGAGCGTA
TTAGCTCTGTCGACACACCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAGAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTTTGACAC
GTGAGCGTGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAGGTTTTAATCAAGCAAGGTTTGAATATGGAA
AACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851