Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACEUKD_RS12320 Genome accession   NZ_CP169050
Coordinates   2659159..2659677 (-) Length   172 a.a.
NCBI ID   WP_005396698.1    Uniprot ID   A0AAE4S8W0
Organism   Vibrio diabolicus strain SF42     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2654159..2664677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS12295 (ACEUKD_12295) rimM 2654225..2654773 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  ACEUKD_RS12300 (ACEUKD_12300) rpsP 2654803..2655051 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  ACEUKD_RS12305 (ACEUKD_12305) ffh 2655261..2656643 (-) 1383 WP_005385423.1 signal recognition particle protein -
  ACEUKD_RS12310 (ACEUKD_12310) - 2656868..2657662 (+) 795 WP_047008980.1 inner membrane protein YpjD -
  ACEUKD_RS12315 (ACEUKD_12315) - 2657787..2659055 (+) 1269 WP_047008981.1 HlyC/CorC family transporter -
  ACEUKD_RS12320 (ACEUKD_12320) luxS 2659159..2659677 (-) 519 WP_005396698.1 S-ribosylhomocysteine lyase Regulator
  ACEUKD_RS12325 (ACEUKD_12325) - 2659762..2660328 (-) 567 WP_012841415.1 hypothetical protein -
  ACEUKD_RS12330 (ACEUKD_12330) gshA 2660392..2661960 (-) 1569 WP_253651603.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19078.77 Da        Isoelectric Point: 4.6153

>NTDB_id=1049553 ACEUKD_RS12320 WP_005396698.1 2659159..2659677(-) (luxS) [Vibrio diabolicus strain SF42]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1049553 ACEUKD_RS12320 WP_005396698.1 2659159..2659677(-) (luxS) [Vibrio diabolicus strain SF42]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCGGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATTC
ATACACTAGAGCACCTTTATGCAGGCTTTATGCGCAATCATCTAAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACGGGCTTTTACATGAGCCTGATTGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
CATGGAAGACGTACTAAAGGTAGAAAGCCAGAACAAGATCCCTGAACTCAACGAATACCAATGTGGCACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAGATCGCAAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment