Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACEUKD_RS10145 Genome accession   NZ_CP169050
Coordinates   2173913..2175319 (-) Length   468 a.a.
NCBI ID   WP_005396653.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2168913..2180319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS10110 (ACEUKD_10110) moaE 2169440..2169895 (-) 456 WP_330944465.1 molybdopterin synthase catalytic subunit MoaE -
  ACEUKD_RS10115 (ACEUKD_10115) moaD 2169897..2170154 (-) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  ACEUKD_RS10120 (ACEUKD_10120) moaC 2170151..2170630 (-) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACEUKD_RS10125 (ACEUKD_10125) moaB 2170657..2171169 (-) 513 WP_005396648.1 molybdenum cofactor biosynthesis protein B -
  ACEUKD_RS10130 (ACEUKD_10130) moaA 2171275..2172264 (-) 990 WP_005396649.1 GTP 3',8-cyclase MoaA -
  ACEUKD_RS10135 (ACEUKD_10135) - 2172563..2173459 (+) 897 WP_006742807.1 YvcK family protein -
  ACEUKD_RS10140 (ACEUKD_10140) luxU 2173572..2173916 (-) 345 WP_012841577.1 quorum-sensing phosphorelay protein LuxU -
  ACEUKD_RS10145 (ACEUKD_10145) luxO 2173913..2175319 (-) 1407 WP_005396653.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACEUKD_RS10150 (ACEUKD_10150) uvrB 2175614..2177644 (-) 2031 WP_046874402.1 excinuclease ABC subunit UvrB -
  ACEUKD_RS10160 (ACEUKD_10160) rsxA 2178609..2179187 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  ACEUKD_RS10165 (ACEUKD_10165) rsxB 2179191..2179787 (+) 597 WP_005396655.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52118.68 Da        Isoelectric Point: 6.2543

>NTDB_id=1049546 ACEUKD_RS10145 WP_005396653.1 2173913..2175319(-) (luxO) [Vibrio diabolicus strain SF42]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=1049546 ACEUKD_RS10145 WP_005396653.1 2173913..2175319(-) (luxO) [Vibrio diabolicus strain SF42]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCTCAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTCTGCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGTTAAAAA
ACGAGGCTGATAACCCGGGCAATCAAAGTTATCAAGGCTTTATTGGCAGCAGCCAAACTATGCAACAGGTTTACCGCACG
ATTGATTCAGCAGCGAGCAGTAAAGCGAGTATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCCGAGGC
AATCCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGTGCTTTTACCGGTGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGATGGT
GGCACACTTTTCCTTGATGAATTGTGTGAGATGGATTTAGATTTGCAAACCAAATTGCTACGATTTATTCAAACCGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCACCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATACTCACTGTTAGGCTATATGTCGCACGAAGAAGGAAAAAGCTTCGTGCGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCAGGCAACGTTCGTCAGTTACAAAACGTGCTGCGCAATA
TCGTTGTTCTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCGCTTGACCGTCCGTCT
TCTGTGGCGAAATTCATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.082

95.94

0.835

Multiple sequence alignment