Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACEUKD_RS07055 Genome accession   NZ_CP169050
Coordinates   1542474..1543997 (-) Length   507 a.a.
NCBI ID   WP_374093066.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537474..1548997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS07035 (ACEUKD_07035) - 1537482..1538912 (-) 1431 WP_258666616.1 lipopolysaccharide biosynthesis protein -
  ACEUKD_RS07040 (ACEUKD_07040) - 1538905..1540077 (-) 1173 WP_374093063.1 glycosyltransferase family 4 protein -
  ACEUKD_RS07045 (ACEUKD_07045) - 1540089..1541273 (-) 1185 WP_374093064.1 glycosyltransferase -
  ACEUKD_RS07050 (ACEUKD_07050) - 1541429..1542499 (-) 1071 WP_374093065.1 glycosyltransferase family 4 protein -
  ACEUKD_RS07055 (ACEUKD_07055) luxO 1542474..1543997 (-) 1524 WP_374093066.1 sigma-54-dependent transcriptional regulator Regulator
  ACEUKD_RS07060 (ACEUKD_07060) - 1544274..1544654 (-) 381 WP_005394262.1 Hpt domain-containing protein -
  ACEUKD_RS07065 (ACEUKD_07065) - 1544666..1545352 (-) 687 WP_053807396.1 AAA family ATPase -
  ACEUKD_RS07070 (ACEUKD_07070) - 1545352..1547454 (-) 2103 WP_374093067.1 SLBB domain-containing protein -
  ACEUKD_RS07075 (ACEUKD_07075) - 1547451..1548317 (-) 867 WP_046875254.1 OmpA family protein -
  ACEUKD_RS07080 (ACEUKD_07080) - 1548344..1548664 (-) 321 WP_005394270.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 56802.73 Da        Isoelectric Point: 6.0406

>NTDB_id=1049544 ACEUKD_RS07055 WP_374093066.1 1542474..1543997(-) (luxO) [Vibrio diabolicus strain SF42]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATIDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVNHLPAQLTRKSKTVRTSTPA
HVTQEPAPPPTITSQPVYVEEQSAPAREPSIPTPEPNIQSSAAASPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNAA
VMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1049544 ACEUKD_RS07055 WP_374093066.1 1542474..1543997(-) (luxO) [Vibrio diabolicus strain SF42]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTCAAAGACGAACCTTA
TGACATTTTTCATGTCGAAACAGGTCGCGAAGCAATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGATATGTCTGGTGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACCTCCGTTATTATTGCT
ACAGCGCACGGCAGCGTAGACTTAGCCGTTAACCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAACCTATTAACGC
CGATCGCCTAAAAACTTCTGTTGCATTACACCTCAAACGCGCCAAATTGGAAGATTTAGTAGAAAACATTCAGTCCAAGT
TTGATCGCCATAACTATCACGGATTTATCGGTTCAAGTCTCCCAATGCAGGCGGTATATAAAACCATTGATGCCGTTGCT
CCAACATCTGCCAGTGTCTTTATTGTGGGTGAAAGCGGCACAGGTAAAGAAGTCTGTGCTGAAGCCGTGCACCGTCAGAG
CGATCGTAAAGACAAGCCTTTTATTGCTATTAACTGCGGGGCTATCCCACGAGATTTAATGGAAAGTGAGATCTTTGGCC
ACGTTAAAGGCGCATTTACCGGAGCCACAATAGACCGAAAAGGTGCTGCGACGCTGGCTCACGGTGGTACGCTTTTTCTC
GATGAACTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTTCAAACAGGAACCTACACACCGCTTGG
CGGCACTCGAGAGATGAAGGTGGATGTTCGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTGGAAGAAGGTC
GTTTTCGTGAAGATTTGTATTACCGCGTACACGTAATACCTATCGATATGCCCCCCCTACGCGAGCGAGGAAGTGACATT
GTCACGCTAGCCAAGCACTTTTTGACCACTTATGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAATTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ATGACGAAAAAGTCACGGTGAATCACCTACCCGCTCAACTGACTAGAAAGTCTAAAACGGTGAGAACATCCACTCCCGCA
CATGTAACTCAAGAGCCAGCACCCCCTCCAACAATAACATCCCAACCAGTGTATGTTGAGGAACAATCGGCCCCCGCTAG
AGAACCGTCAATACCGACACCGGAACCTAACATACAATCATCAGCGGCTGCCTCGCCGTACTTTAACTCTGATGGAACCA
TTCGCCCTATGTGGCAAGTGGAGCGTGAGGCGATTCAAAACGCAATCGCATACTGTGATGGCAACGTACTCAATGCCGCC
GTAATGCTGGAGCTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACAATC
TTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(457-493)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.493

97.239

0.481

Multiple sequence alignment