Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACEUKD_RS06255 Genome accession   NZ_CP169050
Coordinates   1358424..1359845 (-) Length   473 a.a.
NCBI ID   WP_167426672.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1353424..1364845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS06230 (ACEUKD_06230) - 1353940..1354590 (+) 651 WP_243327196.1 thiopurine S-methyltransferase -
  ACEUKD_RS06235 (ACEUKD_06235) purT 1354663..1355838 (-) 1176 WP_243327197.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACEUKD_RS06240 (ACEUKD_06240) cdd 1355984..1356871 (-) 888 WP_109168440.1 cytidine deaminase -
  ACEUKD_RS06245 (ACEUKD_06245) - 1357315..1357992 (-) 678 WP_005377888.1 LrgB family protein -
  ACEUKD_RS06250 (ACEUKD_06250) - 1357994..1358368 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  ACEUKD_RS06255 (ACEUKD_06255) sbcB 1358424..1359845 (-) 1422 WP_167426672.1 exodeoxyribonuclease I Machinery gene
  ACEUKD_RS06260 (ACEUKD_06260) - 1360002..1361375 (-) 1374 WP_258507966.1 L-cystine transporter -
  ACEUKD_RS06265 (ACEUKD_06265) - 1361576..1362265 (-) 690 WP_047008662.1 NAD(P)H-binding protein -
  ACEUKD_RS06270 (ACEUKD_06270) cobT 1362514..1363557 (+) 1044 WP_374093003.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACEUKD_RS06275 (ACEUKD_06275) - 1363557..1364363 (+) 807 WP_104969339.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54402.61 Da        Isoelectric Point: 4.8658

>NTDB_id=1049543 ACEUKD_RS06255 WP_167426672.1 1358424..1359845(-) (sbcB) [Vibrio diabolicus strain SF42]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1049543 ACEUKD_RS06255 WP_167426672.1 1358424..1359845(-) (sbcB) [Vibrio diabolicus strain SF42]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACAAACCCCGCGAAAGATCGCCCAAG
CCAGTTCGCTGGTGTCCGCACAGATGAAAACTTCAATATCATAGGCGAACCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCT
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACAACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGTAACTTTATCGACCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTATTACGCGCGTGCCACGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGGTTGC
GACTATCGAAATGGCGAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGTA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCTTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCACCCAACCAATAATAACGCCGTTATCACTATCGATTTAGCGAAAGACCCTCA
GCCTATTCTAGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGAATTGCTACCAG
TGCCTGTTAAGTTAGTTCATTTAAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACGCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGCGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment