Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACEUKD_RS01240 Genome accession   NZ_CP169050
Coordinates   264393..265400 (-) Length   335 a.a.
NCBI ID   WP_407326326.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 259393..270400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS01220 (ACEUKD_01220) - 259720..260637 (-) 918 WP_374092820.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACEUKD_RS01225 (ACEUKD_01225) hslU 261607..262938 (-) 1332 WP_006742475.1 HslU--HslV peptidase ATPase subunit -
  ACEUKD_RS01230 (ACEUKD_01230) hslV 262962..263513 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  ACEUKD_RS01235 (ACEUKD_01235) ftsN 263629..264177 (-) 549 WP_053809480.1 cell division protein FtsN -
  ACEUKD_RS01240 (ACEUKD_01240) cytR 264393..265400 (-) 1008 WP_407326326.1 DNA-binding transcriptional regulator CytR Regulator
  ACEUKD_RS01245 (ACEUKD_01245) priA 265725..267926 (-) 2202 WP_374092819.1 primosomal protein N' -
  ACEUKD_RS01250 (ACEUKD_01250) rpmE 268222..268443 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  ACEUKD_RS01255 (ACEUKD_01255) rpsJ 268899..269210 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  ACEUKD_RS01260 (ACEUKD_01260) rplC 269225..269854 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36874.39 Da        Isoelectric Point: 6.2447

>NTDB_id=1049533 ACEUKD_RS01240 WP_407326326.1 264393..265400(-) (cytR) [Vibrio diabolicus strain SF42]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTIAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1049533 ACEUKD_RS01240 WP_407326326.1 264393..265400(-) (cytR) [Vibrio diabolicus strain SF42]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCATTAATGAACCCAGAGAA
GGTCTCTTCTTCAACGAGAAAAAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTCACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCTGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGTGAAAGTTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGCACAGATCTACCGTTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTGATGGCGTGTGAATTTGCGCCAGAGTTAGAACTTCCGACAGTACATATTGACAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTAACCCAACTAGGTCATAAACGCATCGCGCAAATCTCGGGGCCAGATAC
GGCAATATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGCCGCGCAGGCATCAATAAAGATCCTCAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCTGAGCCACCAACGGCT
ATTTTCTGCCACTGTGACACAATAGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAGCCTCGCTATG
AGATTGGTCGACAAGCAATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTTTGCTTGAA
ACTAATCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.904

99.701

0.976
  cytR Vibrio cholerae C6706

89.222

99.701

0.89

Multiple sequence alignment