Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABGU85_RS16915 Genome accession   NZ_OZ039848
Coordinates   3433622..3434227 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 30345_1#247     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3428622..3439227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU85_RS16895 aes 3428763..3429722 (+) 960 WP_000801794.1 acetyl esterase -
  ABGU85_RS16900 hemH 3429719..3430681 (-) 963 WP_001250114.1 ferrochelatase -
  ABGU85_RS16905 adk 3430813..3431457 (-) 645 WP_001220233.1 adenylate kinase -
  ABGU85_RS16910 htpG 3431638..3433512 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  ABGU85_RS16915 recR 3433622..3434227 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ABGU85_RS16920 ybaB 3434227..3434556 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ABGU85_RS16925 dnaX 3434609..3436540 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  ABGU85_RS16930 apt 3436669..3437220 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ABGU85_RS16935 ybaN 3437373..3437750 (-) 378 WP_001188900.1 DUF454 family protein -
  ABGU85_RS16940 priC 3437820..3438347 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  ABGU85_RS16945 rsmS 3438361..3438525 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1049529 ABGU85_RS16915 WP_001195025.1 3433622..3434227(-) (recR) [Escherichia coli isolate 30345_1#247]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1049529 ABGU85_RS16915 WP_001195025.1 3433622..3434227(-) (recR) [Escherichia coli isolate 30345_1#247]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443