Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABGU52_RS17440 Genome accession   NZ_OZ039827
Coordinates   3529591..3530196 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 30224_1#273     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3524591..3535196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU52_RS17420 aes 3524732..3525691 (+) 960 WP_000801794.1 acetyl esterase -
  ABGU52_RS17425 hemH 3525688..3526650 (-) 963 WP_001250114.1 ferrochelatase -
  ABGU52_RS17430 adk 3526782..3527426 (-) 645 WP_001220233.1 adenylate kinase -
  ABGU52_RS17435 htpG 3527607..3529481 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  ABGU52_RS17440 recR 3529591..3530196 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ABGU52_RS17445 ybaB 3530196..3530525 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ABGU52_RS17450 dnaX 3530578..3532509 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  ABGU52_RS17455 apt 3532638..3533189 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ABGU52_RS17460 ybaN 3533342..3533719 (-) 378 WP_001188900.1 DUF454 family protein -
  ABGU52_RS17465 priC 3533789..3534316 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  ABGU52_RS17470 rsmS 3534330..3534494 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1049445 ABGU52_RS17440 WP_001195025.1 3529591..3530196(-) (recR) [Escherichia coli isolate 30224_1#273]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1049445 ABGU52_RS17440 WP_001195025.1 3529591..3530196(-) (recR) [Escherichia coli isolate 30224_1#273]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443