Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACET1K_RS09605 Genome accession   NZ_CP169026
Coordinates   1963551..1964180 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain UTME-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1958551..1969180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1K_RS09585 (ACET1K_09580) ycbZ 1958953..1960713 (-) 1761 WP_032344991.1 Lon protease family protein -
  ACET1K_RS09590 (ACET1K_09585) matP 1960899..1961351 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACET1K_RS09595 (ACET1K_09590) ompA 1961426..1962466 (-) 1041 WP_000750416.1 porin OmpA -
  ACET1K_RS09600 (ACET1K_09595) sulA 1962823..1963332 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACET1K_RS09605 (ACET1K_09600) sxy/tfoX 1963551..1964180 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACET1K_RS09610 (ACET1K_09605) yccS 1964143..1966305 (-) 2163 WP_000875023.1 YccS family putative transporter -
  ACET1K_RS09615 (ACET1K_09610) yccF 1966315..1966761 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACET1K_RS09620 (ACET1K_09615) helD 1966884..1968938 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1049439 ACET1K_RS09605 WP_000839153.1 1963551..1964180(+) (sxy/tfoX) [Escherichia coli strain UTME-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1049439 ACET1K_RS09605 WP_000839153.1 1963551..1964180(+) (sxy/tfoX) [Escherichia coli strain UTME-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment