Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | ACET1F_RS18860 | Genome accession | NZ_CP169018 |
| Coordinates | 3607872..3608501 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain UTAK-15 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3582677..3621004 | 3607872..3608501 | within | 0 |
Gene organization within MGE regions
Location: 3582677..3621004
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACET1F_RS18660 (ACET1F_18660) | - | 3582898..3583170 (-) | 273 | WP_001342259.1 | hypothetical protein | - |
| ACET1F_RS18665 (ACET1F_18665) | - | 3583306..3583563 (+) | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| ACET1F_RS18670 (ACET1F_18670) | - | 3583569..3583868 (+) | 300 | WP_000220601.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ACET1F_RS18675 (ACET1F_18675) | - | 3584073..3584417 (-) | 345 | WP_000206830.1 | hypothetical protein | - |
| ACET1F_RS18680 (ACET1F_18680) | - | 3584414..3584779 (-) | 366 | WP_001229296.1 | HNH endonuclease | - |
| ACET1F_RS18685 (ACET1F_18685) | - | 3584781..3584999 (-) | 219 | WP_000209152.1 | DUF4014 family protein | - |
| ACET1F_RS18690 (ACET1F_18690) | - | 3585210..3585722 (-) | 513 | Protein_3667 | ead/Ea22-like family protein | - |
| ACET1F_RS18695 (ACET1F_18695) | - | 3585719..3585895 (-) | 177 | WP_000753069.1 | hypothetical protein | - |
| ACET1F_RS18700 (ACET1F_18700) | - | 3585888..3586070 (-) | 183 | WP_001224662.1 | hypothetical protein | - |
| ACET1F_RS18705 (ACET1F_18705) | - | 3586104..3586316 (-) | 213 | WP_032282412.1 | hypothetical protein | - |
| ACET1F_RS18710 (ACET1F_18710) | - | 3586367..3586723 (-) | 357 | WP_000403783.1 | hypothetical protein | - |
| ACET1F_RS18715 (ACET1F_18715) | - | 3586701..3587162 (-) | 462 | WP_001209480.1 | sigma-E factor regulatory protein RseB domain-containing protein | - |
| ACET1F_RS18720 (ACET1F_18720) | - | 3587159..3587455 (-) | 297 | WP_001266133.1 | DUF4406 domain-containing protein | - |
| ACET1F_RS18725 (ACET1F_18725) | - | 3587452..3587844 (-) | 393 | WP_001040234.1 | DUF977 family protein | - |
| ACET1F_RS18730 (ACET1F_18730) | - | 3587860..3588585 (-) | 726 | WP_000450641.1 | DUF1627 domain-containing protein | - |
| ACET1F_RS18735 (ACET1F_18735) | - | 3588619..3589080 (-) | 462 | WP_000139444.1 | replication protein P | - |
| ACET1F_RS18740 (ACET1F_18740) | - | 3589073..3590083 (-) | 1011 | WP_000729535.1 | DUF1376 domain-containing protein | - |
| ACET1F_RS18745 (ACET1F_18745) | - | 3590170..3590607 (-) | 438 | WP_000693932.1 | toxin YdaT family protein | - |
| ACET1F_RS18750 (ACET1F_18750) | - | 3590604..3590864 (-) | 261 | WP_001172789.1 | YdaS family helix-turn-helix protein | - |
| ACET1F_RS18755 (ACET1F_18755) | - | 3590991..3591383 (+) | 393 | WP_000578360.1 | helix-turn-helix domain-containing protein | - |
| ACET1F_RS18760 (ACET1F_18760) | - | 3591430..3591789 (-) | 360 | WP_001022415.1 | type II toxin-antitoxin system HigA family antitoxin | - |
| ACET1F_RS18765 (ACET1F_18765) | - | 3591792..3592094 (-) | 303 | WP_000692026.1 | type II toxin-antitoxin system HigB family toxin | - |
| ACET1F_RS18770 (ACET1F_18770) | - | 3592430..3592729 (+) | 300 | WP_012817750.1 | hypothetical protein | - |
| ACET1F_RS18775 (ACET1F_18775) | ydfC | 3592801..3593019 (+) | 219 | WP_001171921.1 | protein YdfC | - |
| ACET1F_RS18780 (ACET1F_18780) | dicB | 3593588..3593776 (+) | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| ACET1F_RS18785 (ACET1F_18785) | - | 3593773..3593961 (+) | 189 | WP_000199475.1 | DUF1482 family protein | - |
| ACET1F_RS18790 (ACET1F_18790) | - | 3594056..3596506 (+) | 2451 | WP_000048499.1 | exonuclease | - |
| ACET1F_RS18795 (ACET1F_18795) | - | 3596574..3596816 (+) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| ACET1F_RS18800 (ACET1F_18800) | - | 3596794..3597813 (+) | 1020 | WP_001299351.1 | tyrosine-type recombinase/integrase | - |
| ACET1F_RS18805 (ACET1F_18805) | yccA | 3598221..3598880 (+) | 660 | WP_000375138.1 | FtsH protease modulator YccA | - |
| ACET1F_RS18810 (ACET1F_18810) | tusE | 3598971..3599300 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| ACET1F_RS18815 (ACET1F_18815) | yccX | 3599297..3599575 (-) | 279 | WP_000048244.1 | acylphosphatase | - |
| ACET1F_RS18820 (ACET1F_18820) | rlmI | 3599670..3600860 (+) | 1191 | WP_000116301.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| ACET1F_RS18825 (ACET1F_18825) | hspQ | 3600918..3601235 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| ACET1F_RS18830 (ACET1F_18830) | yccU | 3601280..3601693 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| ACET1F_RS18835 (ACET1F_18835) | yccT | 3601866..3602528 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| ACET1F_RS18840 (ACET1F_18840) | mgsA | 3602624..3603082 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| ACET1F_RS18845 (ACET1F_18845) | helD | 3603114..3605168 (-) | 2055 | WP_001297106.1 | DNA helicase IV | - |
| ACET1F_RS18850 (ACET1F_18850) | yccF | 3605291..3605737 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| ACET1F_RS18855 (ACET1F_18855) | yccS | 3605747..3607909 (+) | 2163 | WP_374041033.1 | YccS family putative transporter | - |
| ACET1F_RS18860 (ACET1F_18860) | sxy/tfoX | 3607872..3608501 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| ACET1F_RS18865 (ACET1F_18865) | sulA | 3608720..3609229 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| ACET1F_RS18870 (ACET1F_18870) | ompA | 3609586..3610626 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| ACET1F_RS18875 (ACET1F_18875) | matP | 3610701..3611153 (-) | 453 | WP_000877167.1 | macrodomain Ter protein MatP | - |
| ACET1F_RS18880 (ACET1F_18880) | ycbZ | 3611339..3613099 (+) | 1761 | WP_000156528.1 | Lon protease family protein | - |
| ACET1F_RS18885 (ACET1F_18885) | fabA | 3613168..3613686 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| ACET1F_RS18890 (ACET1F_18890) | rmf | 3613756..3613923 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| ACET1F_RS18895 (ACET1F_18895) | pqiC | 3614179..3614742 (-) | 564 | WP_000759122.1 | membrane integrity-associated transporter subunit PqiC | - |
| ACET1F_RS18900 (ACET1F_18900) | pqiB | 3614739..3616379 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| ACET1F_RS18905 (ACET1F_18905) | pqiA | 3616384..3617637 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| ACET1F_RS18910 (ACET1F_18910) | uup | 3617767..3619674 (-) | 1908 | WP_000053122.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=1049403 ACET1F_RS18860 WP_000839153.1 3607872..3608501(-) (sxy/tfoX) [Escherichia coli strain UTAK-15]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=1049403 ACET1F_RS18860 WP_000839153.1 3607872..3608501(-) (sxy/tfoX) [Escherichia coli strain UTAK-15]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |