Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU52_RS00435 Genome accession   NZ_OZ039827
Coordinates   86808..87476 (+) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli isolate 30224_1#273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 81808..92476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU52_RS00405 yicC 81827..82690 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  ABGU52_RS00410 rph 82817..83533 (+) 717 WP_001247093.1 ribonuclease PH -
  ABGU52_RS00415 pyrE 83599..84240 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ABGU52_RS00420 slmA 84277..84873 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  ABGU52_RS00425 dut 84980..85438 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ABGU52_RS00430 coaBC 85416..86636 (-) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ABGU52_RS00435 radC 86808..87476 (+) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  ABGU52_RS00440 rpmB 87693..87929 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ABGU52_RS00445 rpmG 87950..88117 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ABGU52_RS00450 mutM 88215..89024 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ABGU52_RS00455 coaD 89063..89542 (-) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  ABGU52_RS00460 waaA 89550..90827 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ABGU52_RS00465 rfaQ 91241..92299 (+) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=1049397 ABGU52_RS00435 WP_001296533.1 86808..87476(+) (radC) [Escherichia coli isolate 30224_1#273]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1049397 ABGU52_RS00435 WP_001296533.1 86808..87476(+) (radC) [Escherichia coli isolate 30224_1#273]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496