Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACET1G_RS16965 Genome accession   NZ_CP169013
Coordinates   3294649..3295233 (-) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli strain UTAK-22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3281304..3306452 3294649..3295233 within 0


Gene organization within MGE regions


Location: 3281304..3306452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1G_RS16895 (ACET1G_16890) - 3282234..3283286 (+) 1053 Protein_3308 3'-5' exoribonuclease domain-containing protein -
  ACET1G_RS16900 (ACET1G_16895) - 3283354..3283596 (+) 243 WP_000273151.1 DUF4224 domain-containing protein -
  ACET1G_RS16905 (ACET1G_16900) - 3283574..3284589 (+) 1016 Protein_3310 tyrosine-type recombinase/integrase -
  ACET1G_RS16910 (ACET1G_16905) yccA 3284998..3285657 (+) 660 WP_000375138.1 FtsH protease modulator YccA -
  ACET1G_RS16915 (ACET1G_16910) tusE 3285748..3286077 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  ACET1G_RS16920 (ACET1G_16915) yccX 3286074..3286352 (-) 279 WP_000048244.1 acylphosphatase -
  ACET1G_RS16925 (ACET1G_16920) rlmI 3286447..3287637 (+) 1191 WP_000116302.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  ACET1G_RS16930 (ACET1G_16925) hspQ 3287695..3288012 (+) 318 WP_001295356.1 heat shock protein HspQ -
  ACET1G_RS16935 (ACET1G_16930) yccU 3288057..3288470 (-) 414 WP_000665217.1 CoA-binding protein -
  ACET1G_RS16940 (ACET1G_16935) yccT 3288643..3289305 (+) 663 WP_000847791.1 DUF2057 family protein -
  ACET1G_RS16945 (ACET1G_16940) mgsA 3289401..3289859 (+) 459 WP_000424181.1 methylglyoxal synthase -
  ACET1G_RS16950 (ACET1G_16945) helD 3289891..3291945 (-) 2055 WP_001297106.1 DNA helicase IV -
  ACET1G_RS16955 (ACET1G_16950) yccF 3292068..3292514 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACET1G_RS16960 (ACET1G_16955) yccS 3292524..3294686 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ACET1G_RS16965 (ACET1G_16960) sxy/tfoX 3294649..3295233 (-) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACET1G_RS16970 (ACET1G_16965) sulA 3295497..3296006 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACET1G_RS16975 (ACET1G_16970) ompA 3296363..3297403 (+) 1041 WP_000750416.1 porin OmpA -
  ACET1G_RS16980 (ACET1G_16975) matP 3297479..3297931 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACET1G_RS16985 (ACET1G_16980) ycbZ 3298117..3299877 (+) 1761 WP_000156528.1 Lon protease family protein -
  ACET1G_RS16990 (ACET1G_16985) fabA 3299946..3300464 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  ACET1G_RS16995 (ACET1G_16990) rmf 3300534..3300701 (-) 168 WP_000828648.1 ribosome modulation factor -
  ACET1G_RS17000 (ACET1G_16995) pqiC 3300957..3301520 (-) 564 WP_000759123.1 membrane integrity-associated transporter subunit PqiC -
  ACET1G_RS17005 (ACET1G_17000) pqiB 3301517..3303157 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  ACET1G_RS17010 (ACET1G_17005) pqiA 3303162..3304415 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  ACET1G_RS17015 (ACET1G_17010) uup 3304545..3306452 (-) 1908 WP_000053122.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=1049381 ACET1G_RS16965 WP_077825616.1 3294649..3295233(-) (sxy/tfoX) [Escherichia coli strain UTAK-22]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1049381 ACET1G_RS16965 WP_077825616.1 3294649..3295233(-) (sxy/tfoX) [Escherichia coli strain UTAK-22]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995

Multiple sequence alignment