Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU56_RS15210 Genome accession   NZ_OZ039820
Coordinates   3063813..3064289 (-) Length   158 a.a.
NCBI ID   WP_021543704.1    Uniprot ID   -
Organism   Escherichia coli isolate 30134_6#3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3058813..3069289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU56_RS15165 ghrA 3058984..3059922 (-) 939 WP_000351279.1 glyoxylate/hydroxypyruvate reductase GhrA -
  ABGU56_RS15175 - 3060393..3061236 (-) 844 Protein_2980 DUF4942 domain-containing protein -
  ABGU56_RS15180 - 3061333..3061530 (-) 198 WP_000839287.1 DUF957 domain-containing protein -
  ABGU56_RS15185 - 3061527..3062030 (-) 504 WP_021531035.1 DUF5983 family protein -
  ABGU56_RS15190 - 3062027..3062404 (-) 378 WP_000854738.1 TA system toxin CbtA family protein -
  ABGU56_RS15195 - 3062451..3062816 (-) 366 WP_021543706.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU56_RS15200 - 3062866..3063510 (-) 645 WP_021543705.1 hypothetical protein -
  ABGU56_RS15205 - 3063529..3063750 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  ABGU56_RS15210 radC 3063813..3064289 (-) 477 WP_021543704.1 RadC family protein Machinery gene
  ABGU56_RS15215 - 3064305..3064784 (-) 480 WP_021543703.1 antirestriction protein -
  ABGU56_RS15220 - 3064878..3065123 (-) 246 WP_001620925.1 hypothetical protein -
  ABGU56_RS15225 - 3065123..3065941 (-) 819 WP_001620924.1 DUF932 domain-containing protein -
  ABGU56_RS15230 istB 3066085..3066840 (-) 756 WP_000065240.1 IS21-like element ISEc10 family helper ATPase IstB -
  ABGU56_RS15235 istA 3066837..3068336 (-) 1500 WP_000174402.1 IS21-like element ISEc10 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17601.26 Da        Isoelectric Point: 7.6151

>NTDB_id=1049355 ABGU56_RS15210 WP_021543704.1 3063813..3064289(-) (radC) [Escherichia coli isolate 30134_6#3]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHGPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1049355 ABGU56_RS15210 WP_021543704.1 3063813..3064289(-) (radC) [Escherichia coli isolate 30134_6#3]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGGACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392