Detailed information NTG1049331

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABGU56_RS05875
• Genome accession: NZ_OZ039820
• Coordinates: 1223157..1224149 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 30134_6#3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1218157..1229149

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABGU56_RS05845	ispD	1218218..1218928 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABGU56_RS05850	ispF	1218928..1219407 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABGU56_RS05855	truD	1219404..1220453 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ABGU56_RS05860	surE	1220434..1221195 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABGU56_RS05865	pcm	1221189..1221815 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABGU56_RS05870	nlpD	1222000..1223094 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ABGU56_RS05875	rpoS	1223157..1224149 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABGU56_RS05880	-	1224320..1224871 (-)	552	WP_001179444.1	flavodoxin family protein	-
ABGU56_RS05885	-	1225096..1226139 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ABGU56_RS05890	ygbN	1226282..1227646 (-)	1365	WP_000104433.1	GntP family transporter	-
ABGU56_RS05895	ygbM	1227735..1228511 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1049331 ABGU56_RS05875 WP_000081550.1 1223157..1224149(+) (rpoS) [Escherichia coli isolate 30134_6#3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1049331 ABGU56_RS05875 WP_000081550.1 1223157..1224149(+) (rpoS) [Escherichia coli isolate 30134_6#3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715