Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACET1Q_RS09550 Genome accession   NZ_CP169003
Coordinates   1955998..1956627 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain UTAK-23     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1943495..1981822 1955998..1956627 within 0


Gene organization within MGE regions


Location: 1943495..1981822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1Q_RS09500 (ACET1Q_09515) uup 1944825..1946732 (+) 1908 WP_000053122.1 ABC transporter ATP-binding protein -
  ACET1Q_RS09505 (ACET1Q_09520) pqiA 1946862..1948115 (+) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  ACET1Q_RS09510 (ACET1Q_09525) pqiB 1948120..1949760 (+) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  ACET1Q_RS09515 (ACET1Q_09530) pqiC 1949757..1950320 (+) 564 WP_000759122.1 membrane integrity-associated transporter subunit PqiC -
  ACET1Q_RS09520 (ACET1Q_09535) rmf 1950576..1950743 (+) 168 WP_000828648.1 ribosome modulation factor -
  ACET1Q_RS09525 (ACET1Q_09540) fabA 1950813..1951331 (-) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  ACET1Q_RS09530 (ACET1Q_09545) ycbZ 1951400..1953160 (-) 1761 WP_000156528.1 Lon protease family protein -
  ACET1Q_RS09535 (ACET1Q_09550) matP 1953346..1953798 (+) 453 WP_000877167.1 macrodomain Ter protein MatP -
  ACET1Q_RS09540 (ACET1Q_09555) ompA 1953873..1954913 (-) 1041 WP_000750416.1 porin OmpA -
  ACET1Q_RS09545 (ACET1Q_09560) sulA 1955270..1955779 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACET1Q_RS09550 (ACET1Q_09565) sxy/tfoX 1955998..1956627 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACET1Q_RS09555 (ACET1Q_09570) yccS 1956590..1958752 (-) 2163 WP_000875023.1 YccS family putative transporter -
  ACET1Q_RS09560 (ACET1Q_09575) yccF 1958762..1959208 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACET1Q_RS09565 (ACET1Q_09580) helD 1959331..1961385 (+) 2055 WP_001297106.1 DNA helicase IV -
  ACET1Q_RS09570 (ACET1Q_09585) mgsA 1961417..1961875 (-) 459 WP_000424181.1 methylglyoxal synthase -
  ACET1Q_RS09575 (ACET1Q_09590) yccT 1961971..1962633 (-) 663 WP_000847791.1 DUF2057 family protein -
  ACET1Q_RS09580 (ACET1Q_09595) yccU 1962806..1963219 (+) 414 WP_000665217.1 CoA-binding protein -
  ACET1Q_RS09585 (ACET1Q_09600) hspQ 1963264..1963581 (-) 318 WP_001295356.1 heat shock protein HspQ -
  ACET1Q_RS09590 (ACET1Q_09605) rlmI 1963639..1964829 (-) 1191 WP_000116301.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  ACET1Q_RS09595 (ACET1Q_09610) yccX 1964924..1965202 (+) 279 WP_000048244.1 acylphosphatase -
  ACET1Q_RS09600 (ACET1Q_09615) tusE 1965199..1965528 (-) 330 WP_000904442.1 sulfurtransferase TusE -
  ACET1Q_RS09605 (ACET1Q_09620) yccA 1965619..1966278 (-) 660 WP_000375138.1 FtsH protease modulator YccA -
  ACET1Q_RS09610 (ACET1Q_09625) - 1966686..1967705 (-) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  ACET1Q_RS09615 (ACET1Q_09630) - 1967683..1967925 (-) 243 WP_000273151.1 DUF4224 domain-containing protein -
  ACET1Q_RS09620 (ACET1Q_09635) - 1967993..1970443 (-) 2451 WP_373945905.1 3'-5' exoribonuclease domain-containing protein -
  ACET1Q_RS09625 (ACET1Q_09640) - 1970538..1970726 (-) 189 WP_000199475.1 DUF1482 family protein -
  ACET1Q_RS09630 (ACET1Q_09645) dicB 1970723..1970911 (-) 189 WP_000449175.1 cell division inhibition protein DicB -
  ACET1Q_RS09635 (ACET1Q_09655) ydfC 1971480..1971698 (-) 219 WP_001171921.1 protein YdfC -
  ACET1Q_RS09640 (ACET1Q_09660) - 1971770..1972069 (-) 300 WP_012817750.1 hypothetical protein -
  ACET1Q_RS09645 (ACET1Q_09665) - 1972405..1972707 (+) 303 WP_000692026.1 type II toxin-antitoxin system HigB family toxin -
  ACET1Q_RS09650 (ACET1Q_09670) - 1972710..1973069 (+) 360 WP_001022415.1 type II toxin-antitoxin system HigA family antitoxin -
  ACET1Q_RS09655 (ACET1Q_09675) - 1973116..1973508 (-) 393 WP_000578360.1 helix-turn-helix domain-containing protein -
  ACET1Q_RS09660 (ACET1Q_09680) - 1973635..1973895 (+) 261 WP_001172789.1 YdaS family helix-turn-helix protein -
  ACET1Q_RS09665 (ACET1Q_09685) - 1973892..1974329 (+) 438 WP_000693932.1 toxin YdaT family protein -
  ACET1Q_RS09670 (ACET1Q_09690) - 1974416..1975426 (+) 1011 WP_000729535.1 DUF1376 domain-containing protein -
  ACET1Q_RS09675 (ACET1Q_09695) - 1975419..1975880 (+) 462 WP_000139444.1 replication protein P -
  ACET1Q_RS09680 (ACET1Q_09700) - 1975914..1976639 (+) 726 WP_000450641.1 DUF1627 domain-containing protein -
  ACET1Q_RS09685 (ACET1Q_09705) - 1976655..1977047 (+) 393 WP_001040234.1 DUF977 family protein -
  ACET1Q_RS09690 (ACET1Q_09710) - 1977044..1977340 (+) 297 WP_001266133.1 DUF4406 domain-containing protein -
  ACET1Q_RS09695 (ACET1Q_09715) - 1977337..1977798 (+) 462 WP_001209480.1 sigma-E factor regulatory protein RseB domain-containing protein -
  ACET1Q_RS09700 (ACET1Q_09720) - 1977776..1978132 (+) 357 WP_136783317.1 hypothetical protein -
  ACET1Q_RS09705 (ACET1Q_09725) - 1978183..1978395 (+) 213 WP_000935422.1 hypothetical protein -
  ACET1Q_RS09710 (ACET1Q_09730) - 1978429..1978611 (+) 183 WP_001224662.1 hypothetical protein -
  ACET1Q_RS09715 (ACET1Q_09735) - 1978604..1978780 (+) 177 WP_000753069.1 hypothetical protein -
  ACET1Q_RS09720 (ACET1Q_09740) - 1978777..1979289 (+) 513 Protein_1894 ead/Ea22-like family protein -
  ACET1Q_RS09725 (ACET1Q_09745) - 1979500..1979718 (+) 219 WP_000209152.1 DUF4014 family protein -
  ACET1Q_RS09730 (ACET1Q_09750) - 1979720..1980085 (+) 366 WP_001229296.1 HNH endonuclease -
  ACET1Q_RS09735 (ACET1Q_09755) - 1980082..1980426 (+) 345 WP_000206830.1 hypothetical protein -
  ACET1Q_RS09740 (ACET1Q_09760) - 1980631..1980930 (-) 300 WP_000220601.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACET1Q_RS09745 (ACET1Q_09765) - 1980936..1981193 (-) 258 WP_001260977.1 type II toxin-antitoxin system ParD family antitoxin -
  ACET1Q_RS09750 (ACET1Q_09770) - 1981229..1981360 (+) 132 WP_001342258.1 hypothetical protein -
  ACET1Q_RS09755 (ACET1Q_09775) - 1981329..1981601 (+) 273 WP_001342259.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1049326 ACET1Q_RS09550 WP_000839153.1 1955998..1956627(+) (sxy/tfoX) [Escherichia coli strain UTAK-23]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1049326 ACET1Q_RS09550 WP_000839153.1 1955998..1956627(+) (sxy/tfoX) [Escherichia coli strain UTAK-23]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment