Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACET1J_RS17915 Genome accession   NZ_CP168998
Coordinates   3467823..3468452 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain UTAK-14     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3462823..3473452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1J_RS17900 (ACET1J_17900) helD 3463065..3465119 (-) 2055 WP_000420533.1 DNA helicase IV -
  ACET1J_RS17905 (ACET1J_17905) yccF 3465242..3465688 (+) 447 WP_001261231.1 YccF domain-containing protein -
  ACET1J_RS17910 (ACET1J_17910) yccS 3465698..3467860 (+) 2163 WP_000875044.1 YccS family putative transporter -
  ACET1J_RS17915 (ACET1J_17915) sxy/tfoX 3467823..3468452 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACET1J_RS17920 (ACET1J_17920) sulA 3468671..3469180 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACET1J_RS17925 (ACET1J_17925) ompA 3469537..3470577 (+) 1041 WP_000750416.1 porin OmpA -
  ACET1J_RS17930 (ACET1J_17930) matP 3470653..3471105 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACET1J_RS17935 (ACET1J_17935) ycbZ 3471291..3473051 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1049313 ACET1J_RS17915 WP_000839153.1 3467823..3468452(-) (sxy/tfoX) [Escherichia coli strain UTAK-14]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1049313 ACET1J_RS17915 WP_000839153.1 3467823..3468452(-) (sxy/tfoX) [Escherichia coli strain UTAK-14]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment