Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACET1N_RS18115 Genome accession   NZ_CP168984
Coordinates   3472973..3473602 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain UTME-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3467973..3478602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1N_RS18100 (ACET1N_18100) helD 3468215..3470269 (-) 2055 WP_000420536.1 DNA helicase IV -
  ACET1N_RS18105 (ACET1N_18105) yccF 3470392..3470838 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACET1N_RS18110 (ACET1N_18110) yccS 3470848..3473010 (+) 2163 WP_123056106.1 YccS family putative transporter -
  ACET1N_RS18115 (ACET1N_18115) sxy/tfoX 3472973..3473602 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACET1N_RS18120 (ACET1N_18120) sulA 3473821..3474330 (+) 510 WP_097735848.1 SOS-induced cell division inhibitor SulA -
  ACET1N_RS18125 (ACET1N_18125) ompA 3474687..3475742 (+) 1056 WP_000750414.1 porin OmpA -
  ACET1N_RS18130 (ACET1N_18130) matP 3475817..3476269 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACET1N_RS18135 (ACET1N_18135) ycbZ 3476455..3478215 (+) 1761 WP_000156509.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1049226 ACET1N_RS18115 WP_000839153.1 3472973..3473602(-) (sxy/tfoX) [Escherichia coli strain UTME-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1049226 ACET1N_RS18115 WP_000839153.1 3472973..3473602(-) (sxy/tfoX) [Escherichia coli strain UTME-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment