Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB3U57_RS28480 Genome accession   NZ_CP168976
Coordinates   5508071..5509420 (-) Length   449 a.a.
NCBI ID   WP_000225359.1    Uniprot ID   -
Organism   Bacillus cereus strain QKG-2024     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5503071..5514420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U57_RS28445 (AB3U57_28445) - 5503239..5503934 (-) 696 WP_000466505.1 hypothetical protein -
  AB3U57_RS28450 (AB3U57_28450) - 5503921..5504709 (-) 789 WP_065382318.1 hypothetical protein -
  AB3U57_RS28455 (AB3U57_28455) - 5504737..5505306 (-) 570 WP_001211060.1 hypothetical protein -
  AB3U57_RS28460 (AB3U57_28460) - 5505424..5505906 (-) 483 WP_000023374.1 hypothetical protein -
  AB3U57_RS28465 (AB3U57_28465) hpf 5506178..5506720 (-) 543 WP_000671185.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AB3U57_RS28470 (AB3U57_28470) cspC 5507043..5507240 (-) 198 WP_001990088.1 cold shock protein CspC -
  AB3U57_RS28475 (AB3U57_28475) - 5507367..5508071 (-) 705 WP_033693505.1 ComF family protein -
  AB3U57_RS28480 (AB3U57_28480) comFA 5508071..5509420 (-) 1350 WP_000225359.1 ATP-dependent helicase ComFA Machinery gene
  AB3U57_RS28485 (AB3U57_28485) - 5509547..5510992 (-) 1446 WP_000499476.1 NlpC/P60 family protein -
  AB3U57_RS28490 (AB3U57_28490) - 5511141..5511455 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  AB3U57_RS28495 (AB3U57_28495) - 5511628..5512470 (-) 843 WP_000684725.1 DegV family protein -
  AB3U57_RS28500 (AB3U57_28500) - 5512707..5513342 (+) 636 WP_000926669.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51115.96 Da        Isoelectric Point: 9.9910

>NTDB_id=1049162 AB3U57_RS28480 WP_000225359.1 5508071..5509420(-) (comFA) [Bacillus cereus strain QKG-2024]
MVAGKQLLLEELSSDLQRKLNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLNRERIPRVLLQWLKMYLNKKYPVFL
FVPHVRYIEEISSLLKSLHNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1049162 AB3U57_RS28480 WP_000225359.1 5508071..5509420(-) (comFA) [Bacillus cereus strain QKG-2024]
ATGGTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGAAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCAACCGTGAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGTACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGGGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCATATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.632

93.096

0.49

Multiple sequence alignment