Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU76_RS13380 Genome accession   NZ_OZ039410
Coordinates   2772664..2773116 (-) Length   150 a.a.
NCBI ID   WP_000177771.1    Uniprot ID   -
Organism   Escherichia coli isolate 30348_2#316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2767664..2778116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU76_RS13355 - 2769256..2770110 (-) 855 WP_001000136.1 hypothetical protein -
  ABGU76_RS13360 - 2770198..2770665 (-) 468 WP_000658784.1 hypothetical protein -
  ABGU76_RS13365 - 2770667..2770864 (-) 198 WP_001095670.1 AlpA family transcriptional regulator -
  ABGU76_RS13370 - 2771087..2771701 (+) 615 WP_000580009.1 hypothetical protein -
  ABGU76_RS13375 - 2771688..2772617 (-) 930 WP_023141324.1 site-specific integrase -
  ABGU76_RS13380 radC 2772664..2773116 (-) 453 WP_000177771.1 DNA repair protein RadC Machinery gene
  ABGU76_RS13385 - 2773118..2773579 (-) 462 WP_000954131.1 hypothetical protein -
  ABGU76_RS13390 - 2773699..2774091 (-) 393 WP_063270541.1 DUF2787 family protein -
  ABGU76_RS13395 - 2774446..2774934 (-) 489 WP_000095786.1 hypothetical protein -
  ABGU76_RS13400 - 2775056..2775325 (+) 270 WP_001531625.1 helix-turn-helix domain-containing protein -
  ABGU76_RS13405 - 2775337..2775864 (+) 528 WP_000246193.1 hypothetical protein -
  ABGU76_RS13410 - 2775879..2776238 (+) 360 WP_001080418.1 hypothetical protein -
  ABGU76_RS13415 - 2776269..2776604 (+) 336 WP_000816505.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17256.99 Da        Isoelectric Point: 6.6015

>NTDB_id=1049093 ABGU76_RS13380 WP_000177771.1 2772664..2773116(-) (radC) [Escherichia coli isolate 30348_2#316]
MTMFTQRETRILDQARDIISRYYQRGVQLCSPDDVRRCVMVELAPLEHEEFGIILLDNQNQLLHREILFRGTLNSVSVHP
REVIKRVLKHNAAAVILVHNHPSGEPEPSRCDIQLTKKLQELLEILDVRLLDHFIVAGTETVSMAERGLV

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1049093 ABGU76_RS13380 WP_000177771.1 2772664..2773116(-) (radC) [Escherichia coli isolate 30348_2#316]
ATGACCATGTTTACCCAGCGTGAAACCCGTATCCTTGACCAGGCGCGTGACATTATTAGCCGGTACTACCAGCGTGGGGT
TCAACTCTGTTCCCCTGATGATGTTCGACGGTGCGTGATGGTTGAGCTGGCACCGCTTGAACATGAAGAGTTTGGCATCA
TCCTACTCGATAATCAGAATCAGCTGCTGCACCGCGAAATCCTGTTCAGGGGTACGCTAAACTCGGTCAGCGTTCACCCC
CGTGAAGTTATTAAGCGTGTGCTGAAACATAACGCCGCCGCCGTCATCCTTGTCCATAATCACCCCAGCGGCGAGCCTGA
ACCCAGCCGGTGTGACATCCAGTTGACCAAAAAGCTTCAGGAGCTGCTGGAAATACTGGATGTGCGGTTACTTGATCACT
TTATCGTGGCAGGAACTGAAACGGTGTCGATGGCTGAGCGAGGACTGGTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(31-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.218

79.333

0.367

Multiple sequence alignment