Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU76_RS04290 Genome accession   NZ_OZ039410
Coordinates   883103..883579 (-) Length   158 a.a.
NCBI ID   WP_001424026.1    Uniprot ID   -
Organism   Escherichia coli isolate 30348_2#316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 878103..888579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU76_RS04245 - 878247..879181 (-) 935 Protein_835 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  ABGU76_RS04250 - 879174..879569 (-) 396 WP_000208383.1 DUF6088 family protein -
  ABGU76_RS04255 - 879638..880483 (-) 846 WP_001280441.1 DUF4942 domain-containing protein -
  ABGU76_RS04260 - 880568..880765 (-) 198 WP_000839260.1 DUF957 domain-containing protein -
  ABGU76_RS04265 - 880782..881269 (-) 488 Protein_839 DUF5983 family protein -
  ABGU76_RS04270 - 881266..881643 (-) 378 WP_001546109.1 TA system toxin CbtA family protein -
  ABGU76_RS04275 - 881720..882100 (-) 381 WP_001546108.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU76_RS04280 - 882150..882794 (-) 645 WP_000086755.1 hypothetical protein -
  ABGU76_RS04285 - 882813..883034 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABGU76_RS04290 radC 883103..883579 (-) 477 WP_001424026.1 RadC family protein Machinery gene
  ABGU76_RS04295 - 883595..884080 (-) 486 WP_000849588.1 antirestriction protein -
  ABGU76_RS04300 - 884135..884953 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  ABGU76_RS04305 - 885053..885286 (-) 234 WP_001119729.1 DUF905 family protein -
  ABGU76_RS04310 - 885365..885820 (-) 456 WP_001545736.1 IrmA family protein -
  ABGU76_RS04315 - 885896..886396 (-) 501 Protein_849 hypothetical protein -
  ABGU76_RS04320 - 886427..888040 (-) 1614 WP_000080195.1 IS66-like element ISEc23 family transposase -
  ABGU76_RS04325 tnpB 888071..888421 (-) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9859

>NTDB_id=1049065 ABGU76_RS04290 WP_001424026.1 883103..883579(-) (radC) [Escherichia coli isolate 30348_2#316]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1049065 ABGU76_RS04290 WP_001424026.1 883103..883579(-) (radC) [Escherichia coli isolate 30348_2#316]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment