Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU76_RS00670 Genome accession   NZ_OZ039410
Coordinates   140858..141526 (+) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli isolate 30348_2#316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 135858..146526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU76_RS00640 yicC 135877..136740 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  ABGU76_RS00645 rph 136867..137583 (+) 717 WP_001247093.1 ribonuclease PH -
  ABGU76_RS00650 pyrE 137649..138290 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ABGU76_RS00655 slmA 138327..138923 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  ABGU76_RS00660 dut 139030..139488 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ABGU76_RS00665 coaBC 139466..140686 (-) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ABGU76_RS00670 radC 140858..141526 (+) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  ABGU76_RS00675 rpmB 141743..141979 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ABGU76_RS00680 rpmG 142000..142167 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ABGU76_RS00685 mutM 142265..143074 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ABGU76_RS00690 coaD 143113..143592 (-) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  ABGU76_RS00695 waaA 143600..144877 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ABGU76_RS00700 rfaQ 145291..146349 (+) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=1049049 ABGU76_RS00670 WP_001296533.1 140858..141526(+) (radC) [Escherichia coli isolate 30348_2#316]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1049049 ABGU76_RS00670 WP_001296533.1 140858..141526(+) (radC) [Escherichia coli isolate 30348_2#316]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496