Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU76_RS00255 Genome accession   NZ_OZ039410
Coordinates   47158..47634 (-) Length   158 a.a.
NCBI ID   WP_001186709.1    Uniprot ID   -
Organism   Escherichia coli isolate 30348_2#316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42158..52634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU76_RS00220 - 43250..43747 (-) 498 WP_000509815.1 hypothetical protein -
  ABGU76_RS00225 - 44340..45185 (-) 846 WP_000065751.1 DUF4942 domain-containing protein -
  ABGU76_RS00230 - 45270..45462 (-) 193 Protein_45 hypothetical protein -
  ABGU76_RS00235 - 45474..45962 (-) 489 WP_000761714.1 DUF5983 family protein -
  ABGU76_RS00240 - 45959..46336 (-) 378 WP_001094448.1 TA system toxin CbtA family protein -
  ABGU76_RS00245 - 46426..46794 (-) 369 WP_024175935.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU76_RS00250 - 46868..47089 (-) 222 WP_000692346.1 DUF987 domain-containing protein -
  ABGU76_RS00255 radC 47158..47634 (-) 477 WP_001186709.1 DNA repair protein RadC Machinery gene
  ABGU76_RS00260 - 47646..48131 (-) 486 WP_000214415.1 antirestriction protein -
  ABGU76_RS00265 - 48223..49041 (-) 819 WP_001234753.1 DUF932 domain-containing protein -
  ABGU76_RS00270 - 49132..49365 (-) 234 WP_001117568.1 DUF905 family protein -
  ABGU76_RS00275 - 49436..52282 (-) 2847 WP_032193765.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17617.26 Da        Isoelectric Point: 7.6151

>NTDB_id=1049047 ABGU76_RS00255 WP_001186709.1 47158..47634(-) (radC) [Escherichia coli isolate 30348_2#316]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1049047 ABGU76_RS00255 WP_001186709.1 47158..47634(-) (radC) [Escherichia coli isolate 30348_2#316]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment