Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACES2M_RS05205 Genome accession   NZ_CP168972
Coordinates   1027608..1028120 (+) Length   170 a.a.
NCBI ID   WP_374029891.1    Uniprot ID   -
Organism   Bdellovibrio bacteriovorus strain Bd19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1022608..1033120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACES2M_RS05180 (ACES2M_05180) - 1024285..1024590 (-) 306 WP_284608196.1 KH domain-containing protein -
  ACES2M_RS05185 (ACES2M_05185) - 1024818..1025045 (+) 228 WP_284608195.1 helix-turn-helix domain-containing protein -
  ACES2M_RS05190 (ACES2M_05190) - 1025190..1026164 (+) 975 WP_374029888.1 MCP four helix bundle domain-containing protein -
  ACES2M_RS05195 (ACES2M_05195) - 1026124..1026798 (+) 675 WP_374029889.1 methyl-accepting chemotaxis protein -
  ACES2M_RS05200 (ACES2M_05200) - 1026935..1027657 (+) 723 WP_374029890.1 signal recognition particle receptor subunit alpha -
  ACES2M_RS05205 (ACES2M_05205) pilA 1027608..1028120 (+) 513 WP_374029891.1 signaling recognition particle receptor family protein Machinery gene
  ACES2M_RS05210 (ACES2M_05210) - 1028121..1028795 (-) 675 WP_284608792.1 oxidoreductase -
  ACES2M_RS05215 (ACES2M_05215) - 1028812..1030731 (-) 1920 WP_284608192.1 DUF4105 domain-containing protein -
  ACES2M_RS05220 (ACES2M_05220) - 1030960..1031322 (+) 363 WP_284608191.1 hypothetical protein -
  ACES2M_RS05225 (ACES2M_05225) - 1031340..1032545 (+) 1206 WP_284608190.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18163.90 Da        Isoelectric Point: 5.6953

>NTDB_id=1049046 ACES2M_RS05205 WP_374029891.1 1027608..1028120(+) (pilA) [Bdellovibrio bacteriovorus strain Bd19]
MVAAGDTFRAAAGGQLKVWTDRAQVEIFSPEGVTDPSAVAFDAVAKGKAQGYDVVIVDTAGRLHTQANLMEEIKKMKRVM
AKVIPEAPHETLIVLDANSGQNALMQAKEFHNALTLTGAILTKMDGTAKGGVAVGLAQELQIPIKLIGVGERIQDLRSFS
SQEFVESLFQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1049046 ACES2M_RS05205 WP_374029891.1 1027608..1028120(+) (pilA) [Bdellovibrio bacteriovorus strain Bd19]
TTGGTTGCGGCAGGGGATACTTTCCGTGCTGCTGCCGGTGGACAGCTTAAGGTTTGGACGGACCGCGCGCAGGTTGAAAT
TTTCTCTCCAGAAGGCGTGACGGATCCAAGTGCCGTGGCTTTCGATGCGGTGGCCAAGGGGAAAGCGCAAGGCTATGACG
TCGTGATCGTCGATACGGCAGGCCGTCTGCATACACAAGCGAACTTGATGGAAGAGATCAAAAAAATGAAGCGGGTTATG
GCGAAGGTCATTCCGGAAGCGCCTCATGAAACTTTGATTGTGCTGGATGCGAATTCAGGTCAAAACGCTTTGATGCAAGC
TAAAGAATTCCACAATGCGCTGACGTTGACAGGCGCGATTTTGACGAAGATGGATGGAACCGCAAAAGGCGGCGTGGCCG
TGGGGCTTGCGCAAGAGTTGCAGATTCCTATTAAACTGATCGGCGTAGGTGAGCGCATTCAGGATTTACGCTCGTTCTCT
TCGCAAGAATTCGTGGAGTCTTTGTTTCAGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(1-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.805

99.412

0.565

Multiple sequence alignment