Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACEQ85_RS10415 Genome accession   NZ_CP168966
Coordinates   2171817..2172701 (+) Length   294 a.a.
NCBI ID   WP_373882558.1    Uniprot ID   -
Organism   Acinetobacter pittii strain LS-AP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2166817..2177701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEQ85_RS10390 (ACEQ85_10390) - 2167130..2168377 (-) 1248 WP_373882556.1 YihY family inner membrane protein -
  ACEQ85_RS10395 (ACEQ85_10395) wrbA 2168739..2169341 (+) 603 WP_373882557.1 NAD(P)H:quinone oxidoreductase -
  ACEQ85_RS10400 (ACEQ85_10400) xpt 2169393..2169968 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  ACEQ85_RS10405 (ACEQ85_10405) - 2170041..2170754 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  ACEQ85_RS10410 (ACEQ85_10410) - 2170913..2171584 (-) 672 WP_002119526.1 hypothetical protein -
  ACEQ85_RS10415 (ACEQ85_10415) tonB2 2171817..2172701 (+) 885 WP_373882558.1 energy transducer TonB Machinery gene
  ACEQ85_RS10420 (ACEQ85_10420) ybeY 2172753..2173229 (-) 477 WP_373882559.1 rRNA maturation RNase YbeY -
  ACEQ85_RS10425 (ACEQ85_10425) phoL 2173239..2174327 (-) 1089 WP_002119513.1 PhoH family protein -
  ACEQ85_RS10430 (ACEQ85_10430) miaB 2174365..2175816 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33667.22 Da        Isoelectric Point: 7.6766

>NTDB_id=1048996 ACEQ85_RS10415 WP_373882558.1 2171817..2172701(+) (tonB2) [Acinetobacter pittii strain LS-AP]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIHQQRELKFEEKVLMTVLSWQKQANASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1048996 ACEQ85_RS10415 WP_373882558.1 2171817..2172701(+) (tonB2) [Acinetobacter pittii strain LS-AP]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTGTTGCTCATTCACTTTGCCATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTGGCACAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGAATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGGGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGACGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.095

100

0.881

Multiple sequence alignment