Detailed information NTG1048983

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABGU81_RS05640
• Genome accession: NZ_OZ039398
• Coordinates: 1169754..1170746 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 30348_2#256
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1164754..1175746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABGU81_RS05610	ispD	1164815..1165525 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABGU81_RS05615	ispF	1165525..1166004 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABGU81_RS05620	truD	1166001..1167050 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ABGU81_RS05625	surE	1167031..1167792 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABGU81_RS05630	pcm	1167786..1168412 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABGU81_RS05635	nlpD	1168597..1169691 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ABGU81_RS05640	rpoS	1169754..1170746 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABGU81_RS05645	-	1170917..1171468 (-)	552	WP_001179444.1	flavodoxin family protein	-
ABGU81_RS05650	-	1171693..1172736 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ABGU81_RS05655	ygbN	1172879..1174243 (-)	1365	WP_000104433.1	GntP family transporter	-
ABGU81_RS05660	ygbM	1174332..1175108 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1048983 ABGU81_RS05640 WP_000081550.1 1169754..1170746(+) (rpoS) [Escherichia coli isolate 30348_2#256]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1048983 ABGU81_RS05640 WP_000081550.1 1169754..1170746(+) (rpoS) [Escherichia coli isolate 30348_2#256]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715