Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8954_RS07190 Genome accession   NZ_AP028365
Coordinates   1364245..1365213 (+) Length   322 a.a.
NCBI ID   WP_317726038.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10632     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359245..1370213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8954_RS07165 (B10632_14120) cdsA 1360155..1360880 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8954_RS07170 (B10632_14130) - 1360889..1361227 (-) 339 WP_002852397.1 hypothetical protein -
  R8954_RS07175 (B10632_14140) - 1361229..1362536 (-) 1308 WP_317726037.1 NFACT family protein -
  R8954_RS07180 (B10632_14150) mobA 1362598..1363173 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  R8954_RS07185 (B10632_14160) pldA 1363170..1364159 (+) 990 WP_002864239.1 phospholipase A -
  R8954_RS07190 (B10632_14170) ceuB 1364245..1365213 (+) 969 WP_317726038.1 ABC transporter permease Machinery gene
  R8954_RS07195 (B10632_14180) ceuC 1365206..1366144 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  R8954_RS07200 (B10632_14190) ceuD 1366141..1366896 (+) 756 WP_002884173.1 ABC transporter ATP-binding protein -
  R8954_RS07205 (B10632_14200) ceuB 1366909..1367901 (+) 993 WP_032582354.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8954_RS07215 (B10632_14210) - 1368127..1368681 (-) 555 WP_032582353.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35495.48 Da        Isoelectric Point: 9.6678

>NTDB_id=104895 R8954_RS07190 WP_317726038.1 1364245..1365213(+) (ceuB) [Campylobacter jejuni strain BCH-10632]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMSEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIIARLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=104895 R8954_RS07190 WP_317726038.1 1364245..1365213(+) (ceuB) [Campylobacter jejuni strain BCH-10632]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGAGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTGCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.137

100

0.981

Multiple sequence alignment