Detailed information NTG0104890

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8954_RS06200
• Genome accession: NZ_AP028365
• Coordinates: 1162593..1163552 (+)
• Length: 319 a.a.
• NCBI ID: WP_032586265.1
• Uniprot ID: A0A5Y8BL20
• Organism: Campylobacter jejuni strain BCH-10632
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1157593..1168552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8954_RS06170 (B10632_12090)	neuC	1158185..1159309 (+)	1125	WP_002859249.1	UDP-N-acetylglucosamine 2-epimerase	-
R8954_RS06175 (B10632_12100)	-	1159302..1159844 (+)	543	Protein_1196	beta-1,4-N-acetylgalactosaminyltransferase	-
R8954_RS06180 (B10632_12110)	-	1159915..1160247 (+)	333	WP_019260376.1	hypothetical protein	-
R8954_RS06185 (B10632_12120)	-	1160244..1160909 (+)	666	WP_002935341.1	cytidylyltransferase domain-containing protein	-
R8954_RS06190 (B10632_12130)	-	1161033..1161782 (+)	750	WP_061099817.1	CatB-related O-acetyltransferase	-
R8954_RS06195 (B10632_12140)	waaV	1161722..1162534 (-)	813	WP_002935342.1	glycosyltransferase family 2 protein	-
R8954_RS06200 (B10632_12150)	waaF	1162593..1163552 (+)	960	WP_032586265.1	glycosyltransferase family 9 protein	Regulator
R8954_RS06205 (B10632_12160)	gmhA	1163533..1164093 (-)	561	WP_023890815.1	D-sedoheptulose 7-phosphate isomerase	-
R8954_RS06210 (B10632_12170)	rfaE1	1164090..1165475 (-)	1386	WP_032586263.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8954_RS06215 (B10632_12180)	rfaD	1165468..1166421 (-)	954	WP_002860242.1	ADP-glyceromanno-heptose 6-epimerase	-
R8954_RS06220 (B10632_12190)	gmhB	1166422..1166984 (-)	563	Protein_1205	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8954_RS06225 (B10632_12200)	-	1167065..1167367 (+)	303	WP_002852762.1	c-type cytochrome	-
R8954_RS06230 (B10632_12210)	ccoS	1167390..1167596 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36740.49 Da
• Isoelectric Point: 10.3923

>NTDB_id=104890 R8954_RS06200 WP_032586265.1 1162593..1163552(+) (waaF) [Campylobacter jejuni strain BCH-10632]
MKIFIHLPTWLGDAVMASLALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGINPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPKRVIEEARNLLKNPHL

Nucleotide

• Length: 960 bp

>NTDB_id=104890 R8954_RS06200 WP_032586265.1 1162593..1163552(+) (waaF) [Campylobacter jejuni strain BCH-10632]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACTTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGAATCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTAAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (96-294)

3D structure

• AlphaFold DB: A0A5Y8BL20

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.044	100	0.94