Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU55_RS21145 Genome accession   NZ_OZ039045
Coordinates   4250249..4250725 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli isolate 30224_1#201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4245249..4255725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU55_RS21090 - 4245390..4245524 (-) 135 Protein_4136 transcriptional regulator -
  ABGU55_RS21095 - 4245494..4245643 (-) 150 Protein_4137 hypothetical protein -
  ABGU55_RS21100 - 4245749..4245925 (-) 177 WP_000839286.1 DUF957 domain-containing protein -
  ABGU55_RS21105 - 4245942..4246337 (-) 396 Protein_4139 DUF5983 family protein -
  ABGU55_RS21110 - 4246369..4247982 (-) 1614 WP_000080195.1 IS66-like element ISEc23 family transposase -
  ABGU55_RS21115 tnpB 4248013..4248363 (-) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -
  ABGU55_RS21120 - 4248360..4248785 (-) 426 WP_000422741.1 IS66-like element accessory protein TnpA -
  ABGU55_RS21125 - 4248872..4248970 (-) 99 Protein_4143 DUF5983 family protein -
  ABGU55_RS21130 - 4248967..4249344 (-) 378 WP_000854759.1 TA system toxin CbtA family protein -
  ABGU55_RS21135 - 4249434..4249802 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU55_RS21140 - 4249965..4250186 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABGU55_RS21145 radC 4250249..4250725 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  ABGU55_RS21150 - 4250741..4251214 (-) 474 WP_001350782.1 antirestriction protein -
  ABGU55_RS21155 - 4251556..4252374 (-) 819 WP_001234738.1 DUF932 domain-containing protein -
  ABGU55_RS21160 - 4252492..4252687 (-) 196 Protein_4150 DUF905 family protein -
  ABGU55_RS21165 cah 4252758..4255604 (-) 2847 WP_021526504.1 calcium-binding autotransporter Cah -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=1048853 ABGU55_RS21145 WP_001186775.1 4250249..4250725(-) (radC) [Escherichia coli isolate 30224_1#201]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1048853 ABGU55_RS21145 WP_001186775.1 4250249..4250725(-) (radC) [Escherichia coli isolate 30224_1#201]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399