Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABGU55_RS17975 Genome accession   NZ_OZ039045
Coordinates   3589338..3589943 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 30224_1#201     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3584338..3594943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU55_RS17955 aes 3584479..3585438 (+) 960 WP_000801794.1 acetyl esterase -
  ABGU55_RS17960 hemH 3585435..3586397 (-) 963 WP_001250114.1 ferrochelatase -
  ABGU55_RS17965 adk 3586529..3587173 (-) 645 WP_001220233.1 adenylate kinase -
  ABGU55_RS17970 htpG 3587354..3589228 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  ABGU55_RS17975 recR 3589338..3589943 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ABGU55_RS17980 ybaB 3589943..3590272 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ABGU55_RS17985 dnaX 3590325..3592256 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  ABGU55_RS17990 apt 3592385..3592936 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ABGU55_RS17995 ybaN 3593089..3593466 (-) 378 WP_001188900.1 DUF454 family protein -
  ABGU55_RS18000 priC 3593536..3594063 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  ABGU55_RS18005 rsmS 3594077..3594241 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1048844 ABGU55_RS17975 WP_001195025.1 3589338..3589943(-) (recR) [Escherichia coli isolate 30224_1#201]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1048844 ABGU55_RS17975 WP_001195025.1 3589338..3589943(-) (recR) [Escherichia coli isolate 30224_1#201]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443