Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU55_RS08820 Genome accession   NZ_OZ039045
Coordinates   1838199..1838675 (-) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli isolate 30224_1#201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1833199..1843675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU55_RS08770 yeeA 1833757..1834815 (+) 1059 WP_001200889.1 FUSC family protein -
  ABGU55_RS08775 tmaR 1834987..1835316 (+) 330 WP_000450409.1 DUF496 family protein -
  ABGU55_RS08780 - 1835417..1835599 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  ABGU55_RS08785 - 1835719..1835799 (+) 81 WP_023441679.1 hypothetical protein -
  ABGU55_RS08790 - 1836088..1836168 (-) 81 Protein_1720 hypothetical protein -
  ABGU55_RS08795 yeeW 1836214..1836408 (-) 195 WP_000988600.1 DUF5983 family protein -
  ABGU55_RS08800 cbtA 1836405..1836779 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ABGU55_RS08805 cbeA 1836868..1837236 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU55_RS08810 - 1837252..1837896 (-) 645 WP_000086752.1 hypothetical protein -
  ABGU55_RS08815 yeeT 1837915..1838136 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABGU55_RS08820 radC 1838199..1838675 (-) 477 WP_001186200.1 RadC family protein Machinery gene
  ABGU55_RS08825 - 1838691..1839164 (-) 474 WP_001542276.1 antirestriction protein -
  ABGU55_RS08830 - 1839258..1839503 (-) 246 WP_001164966.1 hypothetical protein -
  ABGU55_RS08835 - 1839503..1840321 (-) 819 WP_001542275.1 DUF932 domain-containing protein -
  ABGU55_RS08840 - 1840542..1840952 (-) 411 WP_000846703.1 hypothetical protein -
  ABGU55_RS08845 - 1840968..1841318 (-) 351 Protein_1731 hypothetical protein -
  ABGU55_RS08850 istB 1841401..1842147 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=1048828 ABGU55_RS08820 WP_001186200.1 1838199..1838675(-) (radC) [Escherichia coli isolate 30224_1#201]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1048828 ABGU55_RS08820 WP_001186200.1 1838199..1838675(-) (radC) [Escherichia coli isolate 30224_1#201]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392