Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABGU75_RS18545 Genome accession   NZ_OZ038879
Coordinates   3730366..3730971 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 30348_1#195     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3725366..3735971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU75_RS18525 aes 3725507..3726466 (+) 960 WP_000801794.1 acetyl esterase -
  ABGU75_RS18530 hemH 3726463..3727425 (-) 963 WP_001250114.1 ferrochelatase -
  ABGU75_RS18535 adk 3727557..3728201 (-) 645 WP_001220233.1 adenylate kinase -
  ABGU75_RS18540 htpG 3728382..3730256 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  ABGU75_RS18545 recR 3730366..3730971 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ABGU75_RS18550 ybaB 3730971..3731300 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ABGU75_RS18555 dnaX 3731353..3733284 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  ABGU75_RS18560 apt 3733413..3733964 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ABGU75_RS18565 ybaN 3734117..3734494 (-) 378 WP_001188900.1 DUF454 family protein -
  ABGU75_RS18570 priC 3734564..3735091 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  ABGU75_RS18575 rsmS 3735105..3735269 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1048762 ABGU75_RS18545 WP_001195025.1 3730366..3730971(-) (recR) [Escherichia coli isolate 30348_1#195]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1048762 ABGU75_RS18545 WP_001195025.1 3730366..3730971(-) (recR) [Escherichia coli isolate 30348_1#195]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443