Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU75_RS09560 Genome accession   NZ_OZ038879
Coordinates   1999431..1999907 (-) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli isolate 30348_1#195     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1994431..2004907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU75_RS09510 yeeA 1994989..1996047 (+) 1059 WP_001200889.1 FUSC family protein -
  ABGU75_RS09515 tmaR 1996219..1996548 (+) 330 WP_000450409.1 DUF496 family protein -
  ABGU75_RS09520 - 1996649..1996831 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  ABGU75_RS09525 - 1996885..1997031 (+) 147 Protein_1869 transposase domain-containing protein -
  ABGU75_RS09530 - 1997320..1997400 (-) 81 Protein_1870 hypothetical protein -
  ABGU75_RS09535 yeeW 1997446..1997640 (-) 195 WP_000988600.1 DUF5983 family protein -
  ABGU75_RS09540 cbtA 1997637..1998011 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ABGU75_RS09545 cbeA 1998100..1998468 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU75_RS09550 - 1998484..1999128 (-) 645 WP_000086752.1 hypothetical protein -
  ABGU75_RS09555 yeeT 1999147..1999368 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABGU75_RS09560 radC 1999431..1999907 (-) 477 WP_001186200.1 RadC family protein Machinery gene
  ABGU75_RS09565 - 1999923..2000396 (-) 474 WP_001542276.1 antirestriction protein -
  ABGU75_RS09570 - 2000490..2000735 (-) 246 WP_001164966.1 hypothetical protein -
  ABGU75_RS09575 - 2000735..2001553 (-) 819 WP_001542275.1 DUF932 domain-containing protein -
  ABGU75_RS09580 - 2001774..2002184 (-) 411 WP_000846703.1 hypothetical protein -
  ABGU75_RS09585 - 2002200..2002877 (-) 678 WP_001362823.1 hypothetical protein -
  ABGU75_RS09590 - 2003013..2004083 (-) 1071 WP_000102631.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=1048745 ABGU75_RS09560 WP_001186200.1 1999431..1999907(-) (radC) [Escherichia coli isolate 30348_1#195]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1048745 ABGU75_RS09560 WP_001186200.1 1999431..1999907(-) (radC) [Escherichia coli isolate 30348_1#195]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392