Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8945_RS07635 Genome accession   NZ_AP028363
Coordinates   1496341..1496652 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain BCH-10617     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491341..1501652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8945_RS07615 (B10617_15230) ctsE 1492210..1493769 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  R8945_RS07620 (B10617_15240) ctsX 1493759..1494346 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  R8945_RS07625 (B10617_15250) ctsP 1494350..1494958 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8945_RS07630 (B10617_15260) ctsD 1494951..1496363 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8945_RS07635 (B10617_15270) ctsR 1496341..1496652 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8945_RS07640 (B10617_15280) nifJ 1496676..1500236 (-) 3561 WP_002934762.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8945_RS07645 (B10617_15290) - 1500329..1500970 (-) 642 WP_002934763.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=104874 R8945_RS07635 WP_002855438.1 1496341..1496652(-) (ctsR) [Campylobacter jejuni strain BCH-10617]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104874 R8945_RS07635 WP_002855438.1 1496341..1496652(-) (ctsR) [Campylobacter jejuni strain BCH-10617]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment