Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU69_RS22845 Genome accession   NZ_OZ038806
Coordinates   4615750..4616226 (+) Length   158 a.a.
NCBI ID   WP_001186756.1    Uniprot ID   A0A0H2VD88
Organism   Escherichia coli isolate 30345_1#335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4610750..4621226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU69_RS22815 - 4611420..4612304 (+) 885 WP_000010416.1 GTPase family protein -
  ABGU69_RS22820 - 4612507..4613187 (+) 681 WP_001282927.1 YafY family protein -
  ABGU69_RS22825 - 4613335..4614012 (+) 678 WP_001097312.1 hypothetical protein -
  ABGU69_RS22830 - 4614018..4614251 (+) 234 WP_001278287.1 DUF905 family protein -
  ABGU69_RS22835 - 4614341..4615159 (+) 819 WP_001175142.1 DUF932 domain-containing protein -
  ABGU69_RS22840 - 4615250..4615735 (+) 486 WP_000860054.1 antirestriction protein -
  ABGU69_RS22845 radC 4615750..4616226 (+) 477 WP_001186756.1 RadC family protein Machinery gene
  ABGU69_RS22850 - 4616295..4616516 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  ABGU69_RS22855 cbeA 4616595..4616972 (+) 378 WP_015953067.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ABGU69_RS22860 - 4617019..4617396 (+) 378 WP_001094436.1 TA system toxin CbtA family protein -
  ABGU69_RS22865 - 4617393..4617881 (+) 489 WP_000761714.1 DUF5983 family protein -
  ABGU69_RS22870 - 4617893..4618090 (+) 198 WP_000839254.1 DUF957 domain-containing protein -
  ABGU69_RS22875 - 4618175..4618885 (+) 711 WP_001621817.1 DUF4942 domain-containing protein -
  ABGU69_RS22880 istB 4618934..4619689 (-) 756 WP_000065240.1 IS21-like element ISEc10 family helper ATPase IstB -
  ABGU69_RS22885 istA 4619686..4621185 (-) 1500 WP_029700729.1 IS21-like element ISEc10 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.31 Da        Isoelectric Point: 7.6149

>NTDB_id=1048684 ABGU69_RS22845 WP_001186756.1 4615750..4616226(+) (radC) [Escherichia coli isolate 30345_1#335]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1048684 ABGU69_RS22845 WP_001186756.1 4615750..4616226(+) (radC) [Escherichia coli isolate 30345_1#335]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VD88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399