Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU69_RS00600 Genome accession   NZ_OZ038806
Coordinates   117880..118548 (+) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli isolate 30345_1#335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 112880..123548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU69_RS00570 yicC 112899..113762 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  ABGU69_RS00575 rph 113889..114605 (+) 717 WP_001247093.1 ribonuclease PH -
  ABGU69_RS00580 pyrE 114671..115312 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ABGU69_RS00585 slmA 115349..115945 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  ABGU69_RS00590 dut 116052..116510 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ABGU69_RS00595 coaBC 116488..117708 (-) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ABGU69_RS00600 radC 117880..118548 (+) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  ABGU69_RS00605 rpmB 118765..119001 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ABGU69_RS00610 rpmG 119022..119189 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ABGU69_RS00615 mutM 119287..120096 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ABGU69_RS00620 coaD 120135..120614 (-) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  ABGU69_RS00625 waaA 120622..121899 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ABGU69_RS00630 rfaQ 122313..123371 (+) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=1048624 ABGU69_RS00600 WP_001296533.1 117880..118548(+) (radC) [Escherichia coli isolate 30345_1#335]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1048624 ABGU69_RS00600 WP_001296533.1 117880..118548(+) (radC) [Escherichia coli isolate 30345_1#335]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496