Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU69_RS00260 Genome accession   NZ_OZ038806
Coordinates   47253..47729 (-) Length   158 a.a.
NCBI ID   WP_001186201.1    Uniprot ID   -
Organism   Escherichia coli isolate 30345_1#335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42253..52729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU69_RS00225 - 43251..43748 (-) 498 WP_000509815.1 hypothetical protein -
  ABGU69_RS00230 - 44344..45186 (-) 843 WP_001274548.1 DUF4942 domain-containing protein -
  ABGU69_RS00235 - 45271..45468 (-) 198 WP_000772035.1 DUF957 domain-containing protein -
  ABGU69_RS00240 - 45480..45971 (-) 492 WP_000976825.1 DUF5983 family protein -
  ABGU69_RS00245 - 45968..46342 (-) 375 WP_000854775.1 TA system toxin CbtA family protein -
  ABGU69_RS00250 - 46432..46800 (-) 369 WP_001285645.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU69_RS00255 - 46963..47184 (-) 222 WP_000692303.1 DUF987 domain-containing protein -
  ABGU69_RS00260 radC 47253..47729 (-) 477 WP_001186201.1 RadC family protein Machinery gene
  ABGU69_RS00265 - 47745..48230 (-) 486 WP_000213721.1 antirestriction protein -
  ABGU69_RS00270 - 48322..49140 (-) 819 WP_063611089.1 DUF932 domain-containing protein -
  ABGU69_RS00275 - 49230..49463 (-) 234 WP_001278284.1 DUF905 family protein -
  ABGU69_RS00280 - 49469..50146 (-) 678 WP_001097567.1 hypothetical protein -
  ABGU69_RS00285 - 50297..50977 (-) 681 WP_063611088.1 YafY family protein -
  ABGU69_RS00290 - 51180..52064 (-) 885 WP_225104592.1 GTPase family protein -
  ABGU69_RS00295 - 52058..52252 (+) 195 WP_001304548.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.24 Da        Isoelectric Point: 6.9859

>NTDB_id=1048622 ABGU69_RS00260 WP_001186201.1 47253..47729(-) (radC) [Escherichia coli isolate 30345_1#335]
MQQISFLSGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1048622 ABGU69_RS00260 WP_001186201.1 47253..47729(-) (radC) [Escherichia coli isolate 30345_1#335]
ATGCAACAGATTTCCTTTCTGTCCGGAGAGATGACACCCGGTGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCTCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGTCAGGTTTTCTCCTTTGCCGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386