Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU47_RS20495 Genome accession   NZ_OZ038787
Coordinates   4192040..4192516 (-) Length   158 a.a.
NCBI ID   WP_001186779.1    Uniprot ID   -
Organism   Escherichia coli isolate 30348_1#3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4187040..4197516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU47_RS20455 - 4189154..4189459 (-) 306 Protein_4006 helix-turn-helix domain-containing protein -
  ABGU47_RS20460 - 4189722..4189856 (-) 135 Protein_4007 transcriptional regulator -
  ABGU47_RS20465 - 4189826..4189975 (-) 150 Protein_4008 hypothetical protein -
  ABGU47_RS20470 - 4190081..4190257 (-) 177 WP_000839286.1 DUF957 domain-containing protein -
  ABGU47_RS20475 - 4190274..4190762 (-) 489 WP_000761690.1 DUF5983 family protein -
  ABGU47_RS20480 - 4190759..4191136 (-) 378 WP_000854770.1 TA system toxin CbtA family protein -
  ABGU47_RS20485 - 4191225..4191593 (-) 369 WP_001280950.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABGU47_RS20490 - 4191756..4191977 (-) 222 WP_001220314.1 DUF987 domain-containing protein -
  ABGU47_RS20495 radC 4192040..4192516 (-) 477 WP_001186779.1 RadC family protein Machinery gene
  ABGU47_RS20500 - 4192532..4192996 (-) 465 WP_000855061.1 antirestriction protein -
  ABGU47_RS20505 - 4193338..4194156 (-) 819 WP_001234712.1 DUF932 domain-containing protein -
  ABGU47_RS20510 - 4194274..4194469 (-) 196 Protein_4017 DUF905 family protein -
  ABGU47_RS20515 - 4194540..4196441 (-) 1902 Protein_4018 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17635.23 Da        Isoelectric Point: 7.2523

>NTDB_id=1048599 ABGU47_RS20495 WP_001186779.1 4192040..4192516(-) (radC) [Escherichia coli isolate 30348_1#3]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLLLNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1048599 ABGU47_RS20495 WP_001186779.1 4192040..4192516(-) (radC) [Escherichia coli isolate 30348_1#3]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGCTTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399