Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABGU87_RS17380 Genome accession   NZ_OZ038590
Coordinates   3546330..3546935 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate 30345_1#279     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3541330..3551935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU87_RS17360 aes 3541471..3542430 (+) 960 WP_000801794.1 acetyl esterase -
  ABGU87_RS17365 hemH 3542427..3543389 (-) 963 WP_001250114.1 ferrochelatase -
  ABGU87_RS17370 adk 3543521..3544165 (-) 645 WP_001220233.1 adenylate kinase -
  ABGU87_RS17375 htpG 3544346..3546220 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  ABGU87_RS17380 recR 3546330..3546935 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ABGU87_RS17385 ybaB 3546935..3547264 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ABGU87_RS17390 dnaX 3547317..3549248 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  ABGU87_RS17395 apt 3549377..3549928 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ABGU87_RS17400 ybaN 3550081..3550458 (-) 378 WP_001188900.1 DUF454 family protein -
  ABGU87_RS17405 priC 3550528..3551055 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  ABGU87_RS17410 rsmS 3551069..3551233 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1048414 ABGU87_RS17380 WP_001195025.1 3546330..3546935(-) (recR) [Escherichia coli isolate 30345_1#279]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1048414 ABGU87_RS17380 WP_001195025.1 3546330..3546935(-) (recR) [Escherichia coli isolate 30345_1#279]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment