Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU87_RS08785 Genome accession   NZ_OZ038590
Coordinates   1861116..1861592 (-) Length   158 a.a.
NCBI ID   WP_001186786.1    Uniprot ID   -
Organism   Escherichia coli isolate 30345_1#279     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1856116..1866592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU87_RS08735 sbmC 1856608..1857081 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  ABGU87_RS08740 yeeA 1857279..1858337 (+) 1059 WP_001200890.1 FUSC family protein -
  ABGU87_RS08745 tmaR 1858509..1858838 (+) 330 WP_000450409.1 DUF496 family protein -
  ABGU87_RS08750 - 1858939..1859121 (-) 183 WP_061157913.1 EutP/PduV family microcompartment system protein -
  ABGU87_RS08755 - 1859175..1859321 (+) 147 Protein_1714 transposase domain-containing protein -
  ABGU87_RS08760 - 1859610..1859690 (-) 81 Protein_1715 hypothetical protein -
  ABGU87_RS08765 yeeW 1859736..1859930 (-) 195 WP_000988601.1 DUF5983 family protein -
  ABGU87_RS08770 cbtA 1859927..1860301 (-) 375 WP_061157912.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ABGU87_RS08775 cbeA 1860390..1860758 (-) 369 WP_001535568.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ABGU87_RS08780 yeeT 1860832..1861053 (-) 222 WP_061157911.1 DUF987 domain-containing protein -
  ABGU87_RS08785 radC 1861116..1861592 (-) 477 WP_001186786.1 RadC family protein Machinery gene
  ABGU87_RS08790 - 1861608..1862087 (-) 480 WP_061157910.1 antirestriction protein -
  ABGU87_RS08795 - 1862350..1863171 (-) 822 WP_001234571.1 DUF932 domain-containing protein -
  ABGU87_RS08800 - 1863392..1863802 (-) 411 WP_061157909.1 hypothetical protein -
  ABGU87_RS08805 - 1863818..1864495 (-) 678 WP_001362823.1 hypothetical protein -
  ABGU87_RS08810 - 1864631..1865701 (-) 1071 WP_061157908.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17776.44 Da        Isoelectric Point: 7.6152

>NTDB_id=1048396 ABGU87_RS08785 WP_001186786.1 1861116..1861592(-) (radC) [Escherichia coli isolate 30345_1#279]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1048396 ABGU87_RS08785 WP_001186786.1 1861116..1861592(-) (radC) [Escherichia coli isolate 30345_1#279]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment