Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   R8617_RS05905 Genome accession   NZ_AP028362
Coordinates   1135752..1136702 (+) Length   316 a.a.
NCBI ID   WP_002867402.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10611     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1115956..1146808 1135752..1136702 within 0


Gene organization within MGE regions


Location: 1115956..1146808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8617_RS05810 (B10611_11450) pglI 1115956..1116885 (-) 930 WP_002854071.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  R8617_RS05815 (B10611_11460) pglH 1116878..1117957 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  R8617_RS05820 (B10611_11470) pglK 1117954..1119648 (-) 1695 WP_146263327.1 ABC-type lipopolysaccharide transporter PglK -
  R8617_RS05825 (B10611_11480) galE 1119642..1120628 (-) 987 WP_002867214.1 UDP-glucose 4-epimerase GalE -
  R8617_RS05830 (B10611_11490) - 1120687..1121481 (-) 795 WP_002860221.1 3'-5' exonuclease -
  R8617_RS05835 (B10611_11500) waaC 1121548..1122576 (+) 1029 WP_002859241.1 lipopolysaccharide heptosyltransferase I -
  R8617_RS05840 (B10611_11510) htrB 1122566..1123453 (+) 888 WP_002867215.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  R8617_RS05845 (B10611_11520) - 1123450..1125000 (+) 1551 WP_002867216.1 glycosyltransferase family 2 protein -
  R8617_RS05850 (B10611_11530) - 1124969..1125856 (-) 888 WP_011049886.1 glycosyltransferase family 2 protein -
  R8617_RS05855 (B10611_11540) - 1125849..1127057 (-) 1209 WP_146263328.1 glycosyltransferase family 2 protein -
  R8617_RS05860 (B10611_11550) - 1127135..1127782 (-) 648 WP_234728996.1 glycosyltransferase family 2 protein -
  R8617_RS05865 (B10611_11560) - 1127944..1128093 (-) 150 WP_052783150.1 glycosyltransferase family 2 protein -
  R8617_RS05870 (B10611_11570) - 1128278..1129330 (-) 1053 WP_100608349.1 glycosyltransferase family 2 protein -
  R8617_RS05875 (B10611_11580) - 1129327..1130376 (-) 1050 WP_002867408.1 glycosyltransferase -
  R8617_RS05880 (B10611_11590) glf 1130459..1131568 (-) 1110 WP_234728995.1 UDP-galactopyranose mutase -
  R8617_RS05885 (B10611_11600) galE 1131570..1132544 (-) 975 WP_146263329.1 UDP-glucose 4-epimerase GalE -
  R8617_RS05890 (B10611_11610) - 1132541..1133839 (-) 1299 WP_002867405.1 UDP-glucose dehydrogenase family protein -
  R8617_RS05895 (B10611_11620) - 1133845..1134801 (-) 957 WP_002867404.1 UDP-glucuronic acid decarboxylase family protein -
  R8617_RS05900 (B10611_11630) - 1134872..1135693 (-) 822 WP_002867403.1 glycosyltransferase family 2 protein -
  R8617_RS05905 (B10611_11640) waaF 1135752..1136702 (+) 951 WP_002867402.1 lipopolysaccharide heptosyltransferase II Regulator
  R8617_RS05910 (B10611_11650) - 1136688..1137452 (-) 765 WP_002867401.1 glycosyltransferase family 25 protein -
  R8617_RS05915 (B10611_11660) gmhA 1137452..1138012 (-) 561 WP_002867400.1 D-sedoheptulose 7-phosphate isomerase -
  R8617_RS05920 (B10611_11670) rfaE1 1138009..1139394 (-) 1386 WP_002867399.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  R8617_RS05925 (B10611_11680) rfaD 1139387..1140340 (-) 954 WP_234728994.1 ADP-glyceromanno-heptose 6-epimerase -
  R8617_RS05930 (B10611_11690) gmhB 1140341..1140902 (-) 562 Protein_1144 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  R8617_RS05935 (B10611_11700) - 1140983..1141285 (+) 303 WP_002852762.1 c-type cytochrome -
  R8617_RS05940 (B10611_11710) ccoS 1141308..1141514 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  R8617_RS05945 (B10611_11720) - 1141511..1143868 (-) 2358 WP_074482782.1 heavy metal translocating P-type ATPase -
  R8617_RS05950 (B10611_11730) rho 1143977..1145275 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  R8617_RS05955 (B10611_11740) dnaX 1145279..1146808 (+) 1530 WP_002867395.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36324.91 Da        Isoelectric Point: 10.3207

>NTDB_id=104834 R8617_RS05905 WP_002867402.1 1135752..1136702(+) (waaF) [Campylobacter jejuni strain BCH-10611]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=104834 R8617_RS05905 WP_002867402.1 1135752..1136702(+) (waaF) [Campylobacter jejuni strain BCH-10611]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.652

99.051

0.918

Multiple sequence alignment