Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ABGU78_RS00650 Genome accession   NZ_OZ038535
Coordinates   136374..137042 (+) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli isolate 30602_1#109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 131374..142042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU78_RS00620 yicC 131393..132256 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  ABGU78_RS00625 rph 132383..133099 (+) 717 WP_001247093.1 ribonuclease PH -
  ABGU78_RS00630 pyrE 133165..133806 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ABGU78_RS00635 slmA 133843..134439 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  ABGU78_RS00640 dut 134546..135004 (-) 459 WP_000976070.1 dUTP diphosphatase -
  ABGU78_RS00645 coaBC 134982..136202 (-) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ABGU78_RS00650 radC 136374..137042 (+) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  ABGU78_RS00655 rpmB 137259..137495 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ABGU78_RS00660 rpmG 137516..137683 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ABGU78_RS00665 mutM 137781..138590 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ABGU78_RS00670 coaD 138629..139108 (-) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  ABGU78_RS00675 waaA 139116..140393 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ABGU78_RS00680 rfaQ 140807..141865 (+) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=1048274 ABGU78_RS00650 WP_001296533.1 136374..137042(+) (radC) [Escherichia coli isolate 30602_1#109]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1048274 ABGU78_RS00650 WP_001296533.1 136374..137042(+) (radC) [Escherichia coli isolate 30602_1#109]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496