Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABNR97_RS06245 Genome accession   NZ_OZ021676
Coordinates   1201046..1201189 (+) Length   47 a.a.
NCBI ID   WP_003691943.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1196046..1206189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR97_RS06215 - 1197007..1197441 (+) 435 Protein_1222 pilin -
  ABNR97_RS06220 - 1197765..1198151 (+) 387 Protein_1223 pilin -
  ABNR97_RS06225 lpxC 1198644..1199567 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  ABNR97_RS06230 - 1199696..1200100 (+) 405 Protein_1225 pilin -
  ABNR97_RS06235 - 1200161..1200502 (+) 342 Protein_1226 pilin -
  ABNR97_RS06240 - 1200625..1200743 (+) 119 Protein_1227 pilin -
  ABNR97_RS06245 pilE 1201046..1201189 (+) 144 WP_003691943.1 hypothetical protein Machinery gene
  ABNR97_RS06250 - 1201558..1202060 (+) 503 Protein_1229 pilin -
  ABNR97_RS06255 - 1202595..1203383 (+) 789 WP_348676519.1 opacity family porin -
  ABNR97_RS06260 - 1203357..1203515 (-) 159 WP_154235854.1 hypothetical protein -
  ABNR97_RS06265 pilA 1203653..1204906 (-) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5034.54 Da        Isoelectric Point: 7.2428

>NTDB_id=1048086 ABNR97_RS06245 WP_003691943.1 1201046..1201189(+) (pilE) [Neisseria gonorrhoeae isolate SGC-23-001]
MTGFNDAAGNDKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=1048086 ABNR97_RS06245 WP_003691943.1 1201046..1201189(+) (pilE) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447

Multiple sequence alignment