Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   R8614_RS05545 Genome accession   NZ_AP028361
Coordinates   1065990..1066724 (+) Length   244 a.a.
NCBI ID   WP_032582987.1    Uniprot ID   A0A5T0EYC1
Organism   Campylobacter jejuni strain BCH-10605     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1060990..1071724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8614_RS05515 (B10605_10820) rpsF 1061133..1061510 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R8614_RS05520 (B10605_10830) ssb 1061519..1062070 (+) 552 WP_002853013.1 single-stranded DNA-binding protein -
  R8614_RS05525 (B10605_10840) rpsR 1062081..1062341 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8614_RS05530 (B10605_10850) lon 1062401..1064776 (-) 2376 WP_002852988.1 endopeptidase La -
  R8614_RS05535 (B10605_10860) - 1064793..1065440 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R8614_RS05540 (B10605_10870) fliW 1065601..1065990 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8614_RS05545 (B10605_10880) proC 1065990..1066724 (+) 735 WP_032582987.1 pyrroline-5-carboxylate reductase Machinery gene
  R8614_RS05550 (B10605_10890) ctsT 1066721..1067023 (+) 303 WP_032582988.1 transformation system protein Machinery gene
  R8614_RS05555 (B10605_10900) - 1067020..1067682 (+) 663 WP_052778507.1 hypothetical protein -
  R8614_RS05560 (B10605_10910) - 1067679..1068131 (+) 453 WP_002859148.1 hypothetical protein -
  R8614_RS05565 (B10605_10920) hemD 1068128..1068757 (-) 630 WP_002859147.1 uroporphyrinogen-III synthase -
  R8614_RS05570 (B10605_10930) thiE 1068735..1069367 (-) 633 WP_052778506.1 thiamine phosphate synthase -
  R8614_RS05575 (B10605_10940) thiD 1069357..1070169 (-) 813 WP_052778523.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  R8614_RS05580 (B10605_10950) - 1070166..1070852 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  R8614_RS05585 (B10605_10960) - 1070849..1071610 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence


Protein


Download         Length: 244 a.a.        Molecular weight: 26647.03 Da        Isoelectric Point: 8.5934

>NTDB_id=104805 R8614_RS05545 WP_032582987.1 1065990..1066724(+) (proC) [Campylobacter jejuni strain BCH-10605]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SSAK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=104805 R8614_RS05545 WP_032582987.1 1065990..1066724(+) (proC) [Campylobacter jejuni strain BCH-10605]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACAACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCAATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGT
AGCAGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5T0EYC1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.174

99.18

0.984


Multiple sequence alignment