Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AADG51_RS19815 Genome accession   NZ_OZ001728
Coordinates   4065853..4066329 (-) Length   158 a.a.
NCBI ID   WP_001424026.1    Uniprot ID   -
Organism   Escherichia coli strain FFFEB2 MIAE 11482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4060853..4071329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG51_RS19770 (EERA1257_04055) - 4060906..4061103 (-) 198 WP_000839236.1 DUF957 domain-containing protein -
  AADG51_RS19775 (EERA1257_04056) - 4061115..4061603 (-) 489 WP_001530850.1 DUF5983 family protein -
  AADG51_RS19780 (EERA1257_04057) - 4061600..4061977 (-) 378 WP_000854689.1 TA system toxin CbtA family protein -
  AADG51_RS19785 (EERA1257_04058) - 4062054..4062434 (-) 381 WP_016244189.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AADG51_RS19790 (EERA1257_04059) - 4062484..4063011 (-) 528 Protein_3862 antitoxin of toxin-antitoxin stability system -
  AADG51_RS19795 (EERA1257_04060) istB 4063078..4063833 (-) 756 WP_000065240.1 IS21-like element ISEc10 family helper ATPase IstB -
  AADG51_RS19800 (EERA1257_04061) istA 4063830..4065329 (-) 1500 WP_000174399.1 IS21-like element ISEc10 family transposase -
  AADG51_RS19805 (EERA1257_04062) - 4065407..4065544 (-) 138 WP_016244186.1 hypothetical protein -
  AADG51_RS19810 (EERA1257_04063) - 4065563..4065784 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  AADG51_RS19815 (EERA1257_04064) radC 4065853..4066329 (-) 477 WP_001424026.1 RadC family protein Machinery gene
  AADG51_RS19820 (EERA1257_04065) - 4066345..4066818 (-) 474 WP_000855059.1 antirestriction protein -
  AADG51_RS19825 (EERA1257_04066) - 4066887..4067159 (-) 273 WP_016244185.1 hypothetical protein -
  AADG51_RS19830 (EERA1257_04067) - 4067159..4067980 (-) 822 WP_016244184.1 DUF932 domain-containing protein -
  AADG51_RS19835 - 4068081..4068289 (-) 209 Protein_3871 DUF905 family protein -
  AADG51_RS19840 (EERA1257_04068) - 4068390..4068845 (-) 456 WP_000581506.1 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9859

>NTDB_id=1047889 AADG51_RS19815 WP_001424026.1 4065853..4066329(-) (radC) [Escherichia coli strain FFFEB2 MIAE 11482]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1047889 AADG51_RS19815 WP_001424026.1 4065853..4066329(-) (radC) [Escherichia coli strain FFFEB2 MIAE 11482]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386